Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1118 ATGGTGAGAGGGAAGACCCAAATGAAGCGTATAGAGAACGCGACGAGCAGGCAAGTGACGTTCTCAAAGAGGCGTAATGGGCTTCTTAAGAAGGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAAAGGCAAGCTCCACGAATTTGCAAGCTCCAGGTATGTATATATATACATATGCACTTCACTATATGTTAATTCAGATAATAAATTTTAG 240 0.4208 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPKGKLHEFASSRYVYIYICTSLYVNSDNKF 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1118 79 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 FunFam MADS-box transcription factor MADS-MC 13 76 - -
Bisa06g1118 79 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Bisa06g1118 79 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Bisa06g1118 79 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Bisa06g1118 79 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa06g1118 79 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Bisa06g1118 79 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1118 Bisa-ChrBisa06 39847176 39848029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1118 1 60 MADS-box Gene Family AT2G45660 96.667 1.40e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa06g1118 SRF-TF 1.2e-27 No_clan