Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1117 ATGGTGAGAGGGAAGACGCAAATGAAGCGTATAGAGAACGCGACGAGCAGGCAAGTGACGTTCTCAAAGAGGCGTAATGGGCTTCTCAAGAAGGCCTTTGAGCTCTCAGTTCTCTGCGATGCTGAGCTTGCTCTCATCGTCTTCTCTCCGAAAGGCAAGCTCTATGAATTTGCCAGCTCCAGGTCTATATGTATATGTCAATTGGTGCAAGATGACCTTGTTTTAGCTGTTGCAATTGGGAGCCAAGGACTATGGATTTGGGAGAAGAGAAGAAATAGCAGAGGGTGGAGAAGAAGTGGTGTGCCTCTAGAGTGGCTGCGGCTTTGGGAGAGGCCGATGATGACAGCAAAACGAATCTTTGTTCCTAAAGCAACTGCTTGCGATTCACTTATTAGTTTGGCCATAGATCTTTTGACAGCAGCTACAATATATTTGCTTCAATTCTACAGCTTGAATGAGACAATTGAACGATACCGCAGTTATACCAGAGATGCTCAAACAGTCAACAGATGCCTTGAACAAAATATGCAGGTTCTTCCTCATTCCTAA 549 0.4517 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIVFSPKGKLYEFASSRSICICQLVQDDLVLAVAIGSQGLWIWEKRRNSRGWRRSGVPLEWLRLWERPMMTAKRIFVPKATACDSLISLAIDLLTAATIYLLQFYSLNETIERYRSYTRDAQTVNRCLEQNMQVLPHS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1117 182 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Bisa06g1117 182 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 69 - -
Bisa06g1117 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Bisa06g1117 182 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Bisa06g1117 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa06g1117 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1117 Bisa-ChrBisa06 39736076 39742970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1117 1 60 MADS-box Gene Family AT2G45660 95.000 1.98e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa06g1117 SRF-TF 2.8e-26 No_clan