Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1116 ATGAGATTACACTATAAATTGCAGTATCTAAAGCAAGAAGCCGAAAGCATGCTGAAGAAGATTGAGCATCTGGAAGTTACAAAACGGAAACTATTGGGGGAACGGTTGGGGTCGTGCTCCATGGAAGAACTACAAGGGATAGAGCAACAGTTGGAAAAGAGTGTAAAAAGCATTCGAGCAAGAAAGGAAAAAGCCCTAGCAGCTGAAAATTCAAAGCTCCGCGACATGTGTTTTAGTTGCTTGCCTTTAGACGTCTTTTCTTATCCTTATGGGTCCATTATGCAGCAGATTTATCTAGCAGATGTTTGGGTTGGATTGGATCCACTCCGGACTGGTATTTTGCGAAAACAAGGAAAGGATGAGGTTACAGTTGTCTGTTACCATGAAATGCCCTTGTTTATTTTTATGGCGAAGATGGTGAGAGGGAAGACACAAATGAAGCGTATAGAGAACACCACAAACAGGCAAGTGACGTTCTCAAAGAGGCGCAAAGGGCTACTTAAGAAGGCTTTTGAGCTCTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATGATCTTCTCTCCAACTGGCAAGTTCTATGAATTTGCAAGCTCCAGGTGA 600 0.43 MRLHYKLQYLKQEAESMLKKIEHLEVTKRKLLGERLGSCSMEELQGIEQQLEKSVKSIRARKEKALAAENSKLRDMCFSCLPLDVFSYPYGSIMQQIYLADVWVGLDPLRTGILRKQGKDEVTVVCYHEMPLFIFMAKMVRGKTQMKRIENTTNRQVTFSKRRKGLLKKAFELSVLCDAEVALMIFSPTGKFYEFASSR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1116 199 SMART madsneu2 139 198 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 Pfam K-box region 6 74 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa06g1116 199 Coils Coil 41 61 - -
Bisa06g1116 199 ProSiteProfiles K-box domain profile. 7 100 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa06g1116 199 SUPERFAMILY SRF-like 141 198 IPR036879 GO:0003677|GO:0046983
Bisa06g1116 199 ProSitePatterns MADS-box domain signature. 141 195 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 148 195 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 CDD MADS_MEF2_like 141 198 IPR033896 GO:0000977|GO:0045944
Bisa06g1116 199 Coils Coil 7 27 - -
Bisa06g1116 199 Gene3D - 151 199 IPR036879 GO:0003677|GO:0046983
Bisa06g1116 199 PRINTS MADS domain signature 176 197 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 PRINTS MADS domain signature 141 161 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 PRINTS MADS domain signature 161 176 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 ProSiteProfiles MADS-box domain profile. 139 199 IPR002100 GO:0003677|GO:0046983
Bisa06g1116 199 PANTHER SERUM RESPONSE FACTOR HOMOLOG 139 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1116 Bisa-ChrBisa06 39700158 39712806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1116 7 62 MADS-box Gene Family AT2G45660 73.214 3.64e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa06g1116 K-box 6.9e-19 No_clan