Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1062 ATGGGGAGCATGAGTGAACCGGACAGAAAACGGCGTCACTTTACCTCCTTGTCTCCCACGGCTGCAGCCGCTACTGCCAAGAAGCTACCCTTCTTGCCCATCTCTGAAGACAAAAAGCTGGATATTGCTGTACTTCAATTTCAAAATCAAAAGCTTACACAGAAATTGGAAACTCAGAAGTTAGAATATACTGATCTTGAGAATAAATTTTCTCAACTGAAGGAGCGGGAACGTTCCTATGATTCCACATCGACAGTGGTCAAGAAGTCTTGGGAACAGGTAGTTGATGATTTGGGGTCATGTTCTGCTCACACAAGAGAGTCTAGCAGTAGCAAATTGGATTCAAACTTTACATCACTTACAGGTGGAAGTCCATCCACCGTTAAGGATGATTTTCTTAGTCGACTTGAGCAAACTGGTGCAACTGAAAGTTCCTCCACATATAGTTGGGCTAACCAGATGGAAGAGGAGCGACAAGTTACTATTGAAAAAGCTAAGAGCATTTTGCAAAATATAGTGACCGCAATTAGTAACATTTGGTGTCTGAAAGATGGATTGCATACTGCAGTATTAACAAAACTTCCAGGAGATGGTTCGTGCGAGCAGAAGTCATTCATCGATCTGAAGTTGGAAGTTGAAGGCTTGAGATCGGCATTGACTGAACTTCATTTAAAACACAAGTCTTTAGCTAGAGAGTTCCAAAGTTATCGAGATGTTGACACCAAAAATAAAGCTGAGCTTAAAAGACTGAAAGGGGAATTGGAAAGCACTGTTGCAGAGTTAGCTGAAAGTAATCACAAACTAGCAACTCTTAAGGCAGAGAGTGATGCAGACAAAGGGGCTGTTTTTCCTGTCTTAAATGTTGGAACTAAGCATGTTGCCAATGATAAGATCAGAGACAAGCAAAAGGATTTGCAAGACATGGAATCTTCTTTGAAGGAGATATTGGACCAAGGATCATCCCGACTGGTGGAACTGAAAAACCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATTTACAGAACACAGTGAAGAACTTGAAGTGTATCACCTCTTCCCAAACTTTCCAATTGGCAAGAGATCAGATAGAAAAGTCAAAATTAGAAGTTCAGGAGTATCAGACCATATTTGAGAAACTACAGGTTGAGAAGGATAACCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAAAGTGATTTAGTGGATGTTTTTCAAAGATCTGTAGCAGTTGCTGATTCTAAAGTGGCTGACTTAGAGACTGAAATAAAGAAAAAAATTGAGGAGAGAAATGTGATTGAAAATAAGCTGCGAGAGGCAGCAAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAGATCCCTGGTTTCTTCATTTCCTGAAGAAATGGGTTCTATGCAAAGTCAATTAAGTAAGTATAAAGAAGCGGCTTCAGACATCCATTCTCTGCGTGCAGATGTACAGTCTCTCTCTAGTATTCTTGAGAGGAAGGTTAAAGAATGTGACATTCTATCTAATAGATCTACTGAACAACTTGCTGAGATTCAGAGGCTGCTTGCGGTGGTCCAAGATTTGAGAGAAAGTGAGCTGGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTTTGGAAGCACGGGATTCAGAATACAGAGCATGGGCACATGTACAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAGCTTCGAGTTAAGACAGCAAATGAAGCAGAAGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTGGACCTGAGACAGAAATTGGATGCTTCCAAGAGGGAGAGAGGTAAAATGTCTGATGTCTTGAAATCAAAAAATGAGGAAAATGAGGCCTACTTATCTGAAATAGAGACTATTGGACAAGCTTATGACGATATGCAAACTCAAAACCAACATCTGCTGCAGCAGATTACTGAGAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTGAGGGCAAGACAAAGGCAGGACTCTCTGGTCATGGAGAAGCGGGCCATGGAACGAGAGATCCAGCAAGCAAATGCAACTCTTAACTTTTATGACATGAAAGCTGCTAGAATTGAAGACCAGTTAAAGTTCTGTTCAGATCAGTGTCAGAGACTTGCCGATGATAAGCTTCAAAGTTCTGCCAATTTGGAAAATATACAAAGGAGGTTGTTGGATGTCAGAAGATCATCAGAACAAGCCAGAGATTCAGTGGAGGAAGTGCAATCTAAAGTTGGTATTGGTCGAGTAACTTGTATGGAGTTACAAGTAGACCTTGAGAGAGAAAGGTTTGCTAGGAAAAGAATAGAGGAGGAGCTGGAGGTTGCCAGGAGAAAGGTTTCATACCTTAGGGCACTGACTGAGGGCTCCTCTGTTGTTGAAAAGCTTCAGCAGGAACTAGGAGAATACAGGGAAATTATTAAGTGCAGTGTCTGCCAAGATAGGACAAAAGAGGTTGTAATCACAAAATGCTATCACTTGCTCTGCAATCCATGTATCCAAAAAGTCATCGAGAGTAGGCATCGGAAATGTCCACTGTGTGCTGCAAGCTTTGGGCCTAATGATGTTAAGCCCATTTATTTGTAA 2643 0.4132 MGSMSEPDRKRRHFTSLSPTAAAATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTDLENKFSQLKERERSYDSTSTVVKKSWEQVVDDLGSCSAHTRESSSSKLDSNFTSLTGGSPSTVKDDFLSRLEQTGATESSSTYSWANQMEEERQVTIEKAKSILQNIVTAISNIWCLKDGLHTAVLTKLPGDGSCEQKSFIDLKLEVEGLRSALTELHLKHKSLAREFQSYRDVDTKNKAELKRLKGELESTVAELAESNHKLATLKAESDADKGAVFPVLNVGTKHVANDKIRDKQKDLQDMESSLKEILDQGSSRLVELKNLHEERIRILQQLCDLQNTVKNLKCITSSQTFQLARDQIEKSKLEVQEYQTIFEKLQVEKDNLAWREREWYIKSDLVDVFQRSVAVADSKVADLETEIKKKIEERNVIENKLREAAREPGRKQIIADFRSLVSSFPEEMGSMQSQLSKYKEAASDIHSLRADVQSLSSILERKVKECDILSNRSTEQLAEIQRLLAVVQDLRESELELKLILEMYRRESIDSRDVLEARDSEYRAWAHVQSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKLDASKRERGKMSDVLKSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQRQDSLVMEKRAMEREIQQANATLNFYDMKAARIEDQLKFCSDQCQRLADDKLQSSANLENIQRRLLDVRRSSEQARDSVEEVQSKVGIGRVTCMELQVDLERERFARKRIEEELEVARRKVSYLRALTEGSSVVEKLQQELGEYREIIKCSVCQDRTKEVVITKCYHLLCNPCIQKVIESRHRKCPLCAASFGPNDVKPIYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1062 880 Coils Coil 298 318 - -
Bisa06g1062 880 Coils Coil 736 756 - -
Bisa06g1062 880 Coils Coil 366 386 - -
Bisa06g1062 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Bisa06g1062 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Bisa06g1062 880 SMART ring_2 828 866 IPR001841 -
Bisa06g1062 880 SUPERFAMILY RING/U-box 820 879 - -
Bisa06g1062 880 Coils Coil 244 274 - -
Bisa06g1062 880 Coils Coil 778 805 - -
Bisa06g1062 880 Coils Coil 42 76 - -
Bisa06g1062 880 CDD RING-HC_Bre1-like 821 878 - -
Bisa06g1062 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Bisa06g1062 880 Coils Coil 582 616 - -
Bisa06g1062 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Bisa06g1062 880 Coils Coil 411 445 - -
Bisa06g1062 880 Coils Coil 680 728 - -
Bisa06g1062 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1062 Bisa-ChrBisa06 37526129 37551822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1062 808 879 C3H Transcription Factor Family AT3G58030 32.895 4.95e-08 54.3