Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0980 ATGGAAGAATTTCGCTTACTCGTAGCACTTCCATTTGTTCTCTTTTTGTTTTCCTCTTCTGTTTCTGGGTATTCTTGGAATGATGTTAAGGTGTGGTGCAGCCAAACCCCTAATCCTCAGCCGTGTGAGTATTTCTTGAACAATAATCCTACTCACAACCACAAACTCATCAAACACGAAGATGATTTTTTCAAGCTTTCACTTCAACTCACACAGGAGCGAGCATTGAAAGGCCATGCAAGCACTCTTTCATTGGGTCCAAAGTGCAGGAACCCACATGAGAAGGCTGCATGGGCTGATTGCATTGAGCTTTATGAGAACACCATTTCCAGGCTCAACAAAACCCTAGACCCTAACACCAGGTGCTCCCAAACAGATGCTCAAACGTGGCTCAGCACAGCTCTCACAAACCTTGAGACATGTAAAGCTGGGTTCTATGAGCTTGGAGTTCAAGACTATGTGTTGCCCTTGATGTCCAACAACGTTACCAAGTTACTAAGCAACACTTTGGCACTAAACAAGGTTCAGTACAAAGAGCCGAGCTATAGAGATGGGTTCCCGACATGGGTCAAGCCCGGTGATAGGAAGTTGTTGCAAAGATCGTATACACCGAGTTCTCGGGCTAACGTAGTGGTGGCTATAGACGGGTCTGGCAAGTACACAACTCTCAGTGCTGCTATAAACGCTGCACCGAAGAGTAGTAGCGGGAGATATGTGATATACGTGAAGGCAGGAATTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGCAAGACCATAATCACCGGAAGCAAAAGCGTTGGAGGAGGCACCACAACCTTCCGTTCTGCCACTGTGGCTGTCGTAGGGGACGGATTTATTGCTCGAGACGTCACATTCAGGAACACTGCTGGAGCATCTAACCATCAAGCGGTGGCATTGCGTTCTGGATCAGACTTATCAGTATTTTACAAGTGTAGCTTTGAAGGCTACCAAGACACACTGTATGTGCATTCCGAGAGACAGTTCTACAGGGAATGTGATATTTATGGCACAGTGGACTTTATCTTTGGCAACGCTGCAGTGGTTTTCCAAAATTGCAACATTTTTGCCAGAAACCCTCCCAACAAAGTCAACACGATCACTGCTCAAGGTCGAACCGATCCAAACCAAAATACTGGCATTTCCATTCACAATTGTAGGGTCACAGCTGCTTCAGATCTAAAACCGGTTCAAGGCTCTGTTAAGACCTATCTTGGAAGGCCATGGCAGAAGTATTCTCGAACAGTTTTCATGAAGACGTTTCTTGATAGCTTGATAAACCAGGCCGGTTGGTTGGAATGGAGTGGTAACTTTGCCTTGAGCACTTTGTACTATGGAGAGTATATGAATACAGGTCCAGGTTCTTCCACCAAAACTCGGGTTAAGTGGTCAGGTTACCATGTTATCACCGCTGCTTCCGAAGCTTCAAAATTCAGTGTGGCAAATTTCATTGCTGGAAACTCATGGTTGCCTGCCACAAGTGTCCCTTTCACCTCCACTTTGTAA 1554 0.4543 MEEFRLLVALPFVLFLFSSSVSGYSWNDVKVWCSQTPNPQPCEYFLNNNPTHNHKLIKHEDDFFKLSLQLTQERALKGHASTLSLGPKCRNPHEKAAWADCIELYENTISRLNKTLDPNTRCSQTDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYKEPSYRDGFPTWVKPGDRKLLQRSYTPSSRANVVVAIDGSGKYTTLSAAINAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIARDVTFRNTAGASNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQGSVKTYLGRPWQKYSRTVFMKTFLDSLINQAGWLEWSGNFALSTLYYGEYMNTGPGSSTKTRVKWSGYHVITAASEASKFSVANFIAGNSWLPATSVPFTSTL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0980 517 PANTHER PECTINESTERASE 15 509 - -
Bisa06g0980 517 SMART PMEI_2 24 172 IPR006501 GO:0004857
Bisa06g0980 517 Gene3D - 204 517 IPR012334 -
Bisa06g0980 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Bisa06g0980 517 FunFam Pectinesterase 203 517 - -
Bisa06g0980 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Bisa06g0980 517 SUPERFAMILY Pectin lyase-like 204 516 IPR011050 -
Bisa06g0980 517 NCBIfam pectinesterase inhibitor domain 9 174 IPR006501 GO:0004857
Bisa06g0980 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Bisa06g0980 517 CDD PMEI-like_3 32 174 - -
Bisa06g0980 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Bisa06g0980 517 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Bisa06g0980 517 SMART complete 242 419 IPR006633 -
Bisa06g0980 517 FunFam Pectinesterase 24 175 - -
Bisa06g0980 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0980 Bisa-ChrBisa06 33377451 33379106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0980 1 517 Carbohydrate Esterase AT2G45220 68.593 0.0 733