Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0793 ATGAAATCAATGCAGCCGTTTTCTAGCTTCTCTTATAAGTGCCTTCAAGTGTCAAGGCAAGCATTCCTTCTTCCTCGTCGCGCCGTTGGCCACTTGTGTCTCTTTAGAGAAGAACGATGCTTTGGTAATGCTGAGTTATTGCCTAGTTCCCGCAGTATCGTATATGTTAAGGCTCAAAAATCAAAGGCCTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAAACTGATTACCGAGCCAGGATTCGGTTGATTAATCAAGACAAGAATAAATACAACACTCCAAAATATCGTTTTGTGGTTCGATTCACAAACAAGGATATCATTGCACAAATAACATCTGCTAGCATTGCTGGTGATATGGTTCTTGCTGCTGCATATGCACATGAGTTGCCACGCTATGGTCTTGAAGTAGGTCTTACAAACTATGCTGCAGCATATTGCACTGGTCTTCTTTTGGCCCGTCGAGTCCTTAAAATGCTTGAAATGGATCAGGAGTACGAGGGGAATTTAGAGGCCACAGGAGAGGACTTTTCTGTTGAACCTGCTGAGTCTAGAAGGCCATTCCGGGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGTAACCGTGTCTTTGGTTCACTTAAGGGAGCTTTGGATGGAGGTCTGGATATTCCTCACAGCGACAAAAGGTTTGCTGGTTTTAGCAAGGATAAGAAAGAGCTTGATCCTGAGGTTCATCGCAAATATATCTATGGTGGTCATGTTGCTATATATATGAAGACCTTGATGGAAGATGAACCAGAGAAATATCAGTTGCACTTTAGTGAATACATCAAGCGAGGATTAGAGCCTGATGGACTTGAGGAGATGTACAAAAAGGTTCATGCGGCCATTAGGGCAGATCCCACAATTAAGAAGTCAGAAAAGCAGCCACCTAAGGAACACAAGAGGTACAACCTGAAGAAACTTACATATGAGGAGAGGAAGACCAAGTTGATTGCACGTTTGCAGGCTCTCAACTCTGCAGCTGGTGCTGCTGACGATGAGGATGATGACGAGTAG 1062 0.435 MKSMQPFSSFSYKCLQVSRQAFLLPRRAVGHLCLFREERCFGNAELLPSSRSIVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDMVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDQEYEGNLEATGEDFSVEPAESRRPFRALLDVGLIRTTTGNRVFGSLKGALDGGLDIPHSDKRFAGFSKDKKELDPEVHRKYIYGGHVAIYMKTLMEDEPEKYQLHFSEYIKRGLEPDGLEEMYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGAADDEDDDE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 72 91 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 196 215 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 216 235 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 258 278 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 136 156 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PRINTS Ribosomal protein L5 signature 95 114 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 PANTHER RIBOSOMAL PROTEIN L5-RELATED 54 342 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 FunFam 60S ribosomal protein L5 53 343 - -
Bisa06g0793 353 CDD Ribosomal_L18_L5e 93 222 - -
Bisa06g0793 353 Gene3D - 53 343 - -
Bisa06g0793 353 MobiDBLite consensus disorder prediction 302 321 - -
Bisa06g0793 353 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 66 227 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa06g0793 353 SUPERFAMILY Translational machinery components 63 304 - -
Bisa06g0793 353 Pfam Ribosomal L18 C-terminal region 287 340 IPR025607 -
Bisa06g0793 353 Hamap 50S ribosomal protein L18 [rplR]. 66 298 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0793 Bisa-ChrBisa06 24539552 24542649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0793 53 344 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.534 0.0 506