Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0706 ATGGCGAAGCCCGGAGTGTTGGAATCTGATCCAACGGTGCCGGCGAAGGCCATAGAGCTGAAGAAGGAGTTGCAGAGACTCGTGAAGTCTATTGTCGACGATGAGGATTGCTGCAGAATCGAAGCAATTGATACGGCCATGGAGACTCTGTCGATGCTGAAGGACTTAAAGCTCAGAGTGAGATCGTCATCGTCGTCTTCATCGTCGTCGCTGTCGCTGACGCTTCCCAGCAACAGAAATGTGGTGGCTAATTGCCCTGAAGAATTCAAATGCCCTCTTTCCAAGGAATTAATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGATCTTCCATTCAGAAATGGCTGAAAGCCGGAAATCGGACTTGCCCTCGGACGCAGCAAGTCCTCTCACACACCGTCCTCACTCCAAATCACCTAATAAGGGAAATGATAGAGCAATGGTGTAAAAACCAAGGGATTGCATTGTCAAACAATGTTCACTATATTAATGAGGAAGGCATATCAAAAGCAGACCATGATCGATTTCTTTCTTTGCTTGAGAAACTGTCTTCATCACTTTCTCAGCAGAAAGCAGCTGCGAAGGAGCTCCGGTTGCTGACAAAGAAGATGCCTTCCTTCCGGGTACTTTTTGGCGAGTCTTGCGATGCCATATCCAAATTACTTCTACCGATCTCCGGGAGTAACTCTCTCGGTAATGTTCATCTTGACCTCCAGGAAGATGTGATCACAACTATTCTAAATATCTCAATCCATGATAAGAACAAGAAGCTTGTAGCAGAAACTCCAATGGTAATTCCTCTTCTTATGAAGGCATTGAGATCAGGAACAATCGAAACACGAAGCAATGCAGCAGCCGCCCTTTTCACTTTGTCGGGTCTTGACTCAAACAAGGAACTCGTAGGTAAATCTGGAGCCTTGAAGCCACTAATTGACCTTTTAGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCATCAGCAATTTTTACCTTATGTGTTCTTCACGAGAATAAGGCAAGAGCCGTGAAGGATGGTGCAGTGAAAGTGATCGTGAAGAAGATCATGGACCGGGTTCATGTCGATGAATTACTCGCCATCCTCGCACTGCTCTCGAGTCAACAGAGGGCGATTCAAGACATGGGTGAGCTGGGAGCCGTTCCTAGCTTGTTGAGCATAATCCGGGAGAGTAATTGTGAACGAAATAAAGAGAATTCCATTGCGATCCTTCAAACTATCTGTCTGTATGATAGAAAAGGGTTGAAGGAAATAAAGGAAGAGGAGAACAGCCATAAAACAATCTCTGAGCTTGCACAAAATGGGACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTTAATAGGGTCGTTAATATTACACACACTGCATAA 1410 0.4525 MAKPGVLESDPTVPAKAIELKKELQRLVKSIVDDEDCCRIEAIDTAMETLSMLKDLKLRVRSSSSSSSSSLSLTLPSNRNVVANCPEEFKCPLSKELMRDPVIVASGQTYDRSSIQKWLKAGNRTCPRTQQVLSHTVLTPNHLIREMIEQWCKNQGIALSNNVHYINEEGISKADHDRFLSLLEKLSSSLSQQKAAAKELRLLTKKMPSFRVLFGESCDAISKLLLPISGSNSLGNVHLDLQEDVITTILNISIHDKNKKLVAETPMVIPLLMKALRSGTIETRSNAAAALFTLSGLDSNKELVGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVLHENKARAVKDGAVKVIVKKIMDRVHVDELLAILALLSSQQRAIQDMGELGAVPSLLSIIRESNCERNKENSIAILQTICLYDRKGLKEIKEEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0706 469 SMART Ubox_2 88 151 IPR003613 GO:0004842|GO:0016567
Bisa06g0706 469 PANTHER U BOX DOMAIN-CONTAINING 16 459 - -
Bisa06g0706 469 SUPERFAMILY RING/U-box 75 159 - -
Bisa06g0706 469 Gene3D - 162 467 IPR011989 -
Bisa06g0706 469 ProSiteProfiles U-box domain profile. 84 158 IPR003613 GO:0004842|GO:0016567
Bisa06g0706 469 Pfam U-box domain 86 155 IPR003613 GO:0004842|GO:0016567
Bisa06g0706 469 Coils Coil 183 203 - -
Bisa06g0706 469 FunFam RING-type E3 ubiquitin transferase 84 158 - -
Bisa06g0706 469 SMART arm_5 255 296 IPR000225 GO:0005515
Bisa06g0706 469 SMART arm_5 376 418 IPR000225 GO:0005515
Bisa06g0706 469 SMART arm_5 297 337 IPR000225 GO:0005515
Bisa06g0706 469 SUPERFAMILY ARM repeat 177 459 IPR016024 -
Bisa06g0706 469 FunFam RING-type E3 ubiquitin transferase 169 465 - -
Bisa06g0706 469 CDD RING-Ubox_PUB 86 138 IPR045210 -
Bisa06g0706 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0706 Bisa-ChrBisa06 21598261 21602155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0706 147 469 U-box Gene Family AT3G07360 61.702 2.72e-133 386