Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0547 ATGGTCCTCGGCCTCGGCACCGGCTTCACACCAGCGTGCAAGCTTCTCAAGTCCGGTGAATTGAAGGACATTGTTGGAGTCCCCACCTCCAAGTGCACCGAGGAGCAAGCGCGATCCGATGAGCTCGGAAATATGGCCTTGCGGGGAACGGAGGACGTATTTAAAGACACAAATCCTGTCGACAGTGAACAGGAAGAATTTTCCGAATCTTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTTCTATCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATTATTCAATGAGCTCTGTGTGCGAGTCCCATTGTCCAGTTTGTCGGTATCCATATTATCACTTTCCGACAATCTGTCAGATGCTTCACTTTTTGCTTCTGAAGATGTATCCTGTTGCTTACGAGAGAAGGGAATATCAAACTCTTGAGGACGAAAAGAAAATGGACTATTTCTCCCCTCAATTTGATGATGCTACATGTGTATCAGAAGCAAAGTTTGATGATTCAGGTAGTTCGTCCTCCTGCAATACCGTAAATGTGGTTTCCAACCAACTAACCACAGGGTCTTCTGCAAGTATGGAGGAATCAGGGTCTGCAACCCATAACCAAGATGAAGGCACTACCTGCTCTAAACATATTTCTGAGGGAACACCTGAAGCTGTGGGGACTCTTTCTGTTGAAGGAAAAAATTTGCCTCAAAATAAGCACCATGGGCAACAGAAGATATCAGTCTCAGATGTGATGTGTGCAGCATGCAAGCAACTACTCTTTCGTCCTGTTGTTCTTAATTGTGGTCATGTATTCTGTGAATCTTGTATCATGAACTTGGCTGATGAAATGCTTAGATGCCAAATTTGTCAAAGTCCACATCCAAGAGGATTCCCAAAAGTTTGTTTGGCGCTTGATCACTTTTTGGAGGAACACTTTCCTGAAAAATATGCACGGCGAAGAAGTGCTGTTCAACTCAGCAAAGACAAAGCTGAGACCCCTTCCTCTTGTATTCGGACAGAGGAGAGGCAGAGTGTGCCGATGGCTCAGTCTTCTGCCCGAGGGGCATACCCAATTCATGCTTTAATGGACCTGTGGGTGGCGCTACTGGAGAGTTACAGGAAGGAGGGCGAGGTTGAGCTGCAGCAGTTATGGCTCGAACTTCCTGTTTTCAGTGGTGATGATCCATGTGGTTGTGTCTTTCAGACCAATGATTTGTCAAGGGGAGCTATTATCAATGGGCTGGAAGAAGATATTCAAGTTCAGGATAGGATGATTAGTCCCAGAATGTGGAGGATAAGAATAGGGCCTCAAAAAGTTGTTGATAATTCTGAAGAACAAGAGGATGGTGAAAACTGGCAGGGTTCACTGGATAATGGTAAAGGAGGAGAAAAAATGGCATGGCGCTCTGATCCTCACTCAGAAGTTCACATTGGAGTCGGTTGTGATTTTTGTGGGATGTATCCAATAGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAAGATTGGTTTCGATCTTTGTGGTATTTGTTATAGAACTTGCTCCAAGCTTCCTGGTCGGTTCAATCAGCAGCACACCCCAGAACATCAGTTTGAACTCATACAACCTAACATTATTCGCAACATAATCAGGCTGGTGACTGGACAGGTAGGGGATGGTCCTATTGAAATTGAGCCTTTGGAAAATTTCGAACTTAGATCCGAAGATCCCACACCAATTGACACTAATGAGGAAGAAAGTACCCCAAATGACTCTGAAGGCACCAATTGA 1776 0.4476 MVLGLGTGFTPACKLLKSGELKDIVGVPTSKCTEEQARSDELGNMALRGTEDVFKDTNPVDSEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHYSMSSVCESHCPVCRYPYYHFPTICQMLHFLLLKMYPVAYERREYQTLEDEKKMDYFSPQFDDATCVSEAKFDDSGSSSSCNTVNVVSNQLTTGSSASMEESGSATHNQDEGTTCSKHISEGTPEAVGTLSVEGKNLPQNKHHGQQKISVSDVMCAACKQLLFRPVVLNCGHVFCESCIMNLADEMLRCQICQSPHPRGFPKVCLALDHFLEEHFPEKYARRRSAVQLSKDKAETPSSCIRTEERQSVPMAQSSARGAYPIHALMDLWVALLESYRKEGEVELQQLWLELPVFSGDDPCGCVFQTNDLSRGAIINGLEEDIQVQDRMISPRMWRIRIGPQKVVDNSEEQEDGENWQGSLDNGKGGEKMAWRSDPHSEVHIGVGCDFCGMYPIVGDRYRCKDCKEKIGFDLCGICYRTCSKLPGRFNQQHTPEHQFELIQPNIIRNIIRLVTGQVGDGPIEIEPLENFELRSEDPTPIDTNEEESTPNDSEGTN 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0547 591 MobiDBLite consensus disorder prediction 563 591 - -
Bisa06g0547 591 FunFam E3 ubiquitin-protein ligase PRT1 471 536 - -
Bisa06g0547 591 SUPERFAMILY RING/U-box 467 536 - -
Bisa06g0547 591 ProSiteProfiles Zinc finger RING-type profile. 73 113 IPR001841 -
Bisa06g0547 591 SUPERFAMILY RING/U-box 249 314 - -
Bisa06g0547 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 322 IPR013083 -
Bisa06g0547 591 MobiDBLite consensus disorder prediction 441 466 - -
Bisa06g0547 591 Pfam RING-type zinc-finger 253 278 IPR027370 -
Bisa06g0547 591 FunFam E3 ubiquitin-protein ligase PRT1 240 336 - -
Bisa06g0547 591 Gene3D - 470 536 IPR043145 -
Bisa06g0547 591 ProSiteProfiles Zinc finger RING-type profile. 253 291 IPR001841 -
Bisa06g0547 591 SUPERFAMILY RING/U-box 65 123 - -
Bisa06g0547 591 Pfam Zinc finger, ZZ type 478 518 IPR000433 GO:0008270
Bisa06g0547 591 ProSitePatterns Zinc finger RING-type signature. 268 277 IPR017907 -
Bisa06g0547 591 FunFam E3 ubiquitin-protein ligase PRT1 64 159 - -
Bisa06g0547 591 SMART ring_2 253 290 IPR001841 -
Bisa06g0547 591 SMART ring_2 73 112 IPR001841 -
Bisa06g0547 591 ProSiteProfiles Zinc finger ZZ-type profile. 477 541 IPR000433 GO:0008270
Bisa06g0547 591 MobiDBLite consensus disorder prediction 193 213 - -
Bisa06g0547 591 PANTHER UNCHARACTERIZED 27 552 - -
Bisa06g0547 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 138 IPR013083 -
Bisa06g0547 591 CDD ZZ_PCMF_like 480 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0547 Bisa-ChrBisa06 15121796 15143055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0547 58 113 C3H Transcription Factor Family AT1G74990 40.000 1.77e-07 48.9