Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0424 ATGACTGAACTCGAAGTTTCTCGCTCGGAGAAGAAGAAGAGCCATAATAAAGAAGACAACAATGAGCCGACCCAGAAAGACACTGACTTCATGATCAAGCCTCAGAGCTTCACTCCCTCCATCGACACCTCTCAGTGGCCGATACTCCTCAAGAACTACGACCGCCTCAATGTACGAACCGGACACTACACTCCCATCCCCTCCGGTTACTCCCCCCTCAAGCGTCCTCTTCCGGAGTACATCAAATACGGCGTTCTCAATCTCGATAAACTCGCGAATCCATCTTCGCACGAGGTCGTGGCTTGGATCAAACGGATTCTCCGGGTCGAGAAGACGGGTCATAGCGGTACTCTCGACCCGAAGGTCACAGGGAACCTCATAGTCTGCATCGATAGAGCCACGCGTACTTATGTGAAGACTATGTGTGTTCATTTGGGGTTGATTCTTGGTGTGGGAGCGCATATGCAAGAGCTTAGAAGGGTGCGTTCGGGGATTTTGGGTGAGAGAGATAACATGGTGACTATGCATGATTTGCTGGATGCTCAATGGGTTTATGATAATTACAGGGATGAGAGTTATTTGAGAAGGGTCATTATGCCACTTGAAGTGCTTTTGACAAGTTACAAGAGATTAGTTATGAAAGATTCAGTTGTGAATGCGATTTGTTATGGAGTAAAGCTGATGATTCCTGGGTTATTGAGGTTTGAGAATGACATCGAGGTCGGTGAAGAAGTTGTGCTTATGACTACCAAGGGTGAAGCAATTGCTTTGGGAATTGCAGAGATGACTACTGCTGTAATGGCAACTTGTGATCATGGTGTGGTTGCCAAGATCAAGAGGGTTGTGATAGATCGAGATACTTATCCAAGGAAATGGGTGGCTGAGGAATGTGGTTTTACTGGTCTTGCTGCTTCATCTGAACCAGATGCAGAGAAGGAAAAGATTAAGAGTGATAATGATGGCAAAGGGCACAAGAGAAAGCTAGCTGAAAGTAATGATAACCCTATTCCTATTCCCACTAAGAAGGCCAAAGTTGAAAAAGTTGAAAAGGTTGAAGGGGAAACATTGAAGGTGAAGAAGGTAAAAGAAGATGTTGTGGAGATTGAAGTTGAGAAGAAAGAAAAGAAGAAAAAGAAGAAGAAGGACAAAGAGAATGGTGAAGTGGCATCCTCAGATGAGGAGAAATCTAAAAAGGATAAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAGGTAGAAGCTACCTCGCCAGATACAGAGAAGTCTAGGAAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAGGACAAAGATTCTAAAGATAAGGCTATTGACTTACCTACAGAGGATGCTGATCAAAGTGAGAAGAAGAAGAAACATAAGAAGAAAAAATCTAAGGATGCTGAGGAGGAATAG 1410 0.4362 MTELEVSRSEKKKSHNKEDNNEPTQKDTDFMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYIKYGVLNLDKLANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRTYVKTMCVHLGLILGVGAHMQELRRVRSGILGERDNMVTMHDLLDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVMKDSVVNAICYGVKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVIDRDTYPRKWVAEECGFTGLAASSEPDAEKEKIKSDNDGKGHKRKLAESNDNPIPIPTKKAKVEKVEKVEGETLKVKKVKEDVVEIEVEKKEKKKKKKKDKENGEVASSDEEKSKKDKKKKKKKKDKEVEATSPDTEKSRKKKKKKKKKKKDKDSKDKAIDLPTEDADQSEKKKKHKKKKSKDAEEE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0424 469 CDD PUA_Cbf5 207 281 - -
Bisa06g0424 469 Coils Coil 358 385 - -
Bisa06g0424 469 SMART pua_5 209 283 IPR002478 GO:0003723
Bisa06g0424 469 MobiDBLite consensus disorder prediction 436 454 - -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 308 331 - -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 1 38 - -
Bisa06g0424 469 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 136 408 IPR004802 GO:0006396
Bisa06g0424 469 Pfam tRNA pseudouridylate synthase B C-terminal domain 140 205 IPR032819 -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 406 420 - -
Bisa06g0424 469 Pfam DKCLD (NUC011) domain 43 100 IPR012960 -
Bisa06g0424 469 Gene3D PUA domain 197 292 IPR036974 GO:0003723
Bisa06g0424 469 SUPERFAMILY PUA domain-like 208 289 IPR015947 -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 308 347 - -
Bisa06g0424 469 Pfam PUA domain 209 281 IPR002478 GO:0003723
Bisa06g0424 469 SUPERFAMILY Pseudouridine synthase 43 206 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa06g0424 469 SMART DKCLD_2 42 100 IPR012960 -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 369 398 - -
Bisa06g0424 469 ProSiteProfiles PUA domain profile. 208 283 - -
Bisa06g0424 469 NCBIfam uncharacterized domain 2 204 279 IPR004521 GO:0003723
Bisa06g0424 469 Coils Coil 449 469 - -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 369 469 - -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 1 26 - -
Bisa06g0424 469 MobiDBLite consensus disorder prediction 421 435 - -
Bisa06g0424 469 Gene3D Pseudouridine synthase 77 135 - -
Bisa06g0424 469 Pfam TruB family pseudouridylate synthase (N terminal domain) 104 137 IPR002501 GO:0006396
Bisa06g0424 469 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 136 292 IPR004802 GO:0006396
Bisa06g0424 469 Gene3D Pseudouridine synthase 136 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0424 Bisa-ChrBisa06 10507665 10509410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0424 99 292 NAC Transcription Factor Family AT3G57150 74.359 1.09e-87 277