LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa06g0366	ATGAAAATCATCACACACATCACCCTCTCTCTTCTTCTTCTCACTTTCTCACCATTAATCCTCTCTTTGACCCACTGTCCACCCTGCGGCCACACCCCCGTGCCTTACCCTCTCAGCACCGACCCACATTGCGGCGACCCCTCCTACAAGCTCCGGTGCACCCACGGCACCCTCTGGCTCGACACCCTCCACGCCTCCTCCTACCCCATCACCTCCATCGACCCCAAAATGCAGCGTTTCATCATCCGCTCGCCCGGCCTCGCAGCCCCCACGGCCTGCGTCTCCGCCGACTTCCGAACCCAAGGCATGTGGCTCGACCCCACAGCGCCCTTCAACATCACCTCTAGCAACACCCTTCTCCTCATGAACTGCTCCCAGGAGGTCTTGTCCCTCTTGTGGAACTGCTCTTCTTCCAGCGTTTGCCATTCTTACATTAAGGGTAATGCCGCCATGGCCGAGGCATGTGGCACGTCGTCGACGTCGATATGCTGTACGAAAAGAACTGGGGGGTCGGCGACGGAGTATAGGATCAGGGTGAGGGAAGAGCGGTGCGCCGCGTACGTGAGTCTTCCGAATTTGGACGAGTCGAAGCCCGCGAGTGAGTGGCCAGAGCCCGGCGTGGAGATCGAGTGGGAGGAGCCGGAGGAGCCGCCGTGCAAGGTAGCGGTGGATTGCAATAGGTTGGTGAATTCGGCTTGTTTGCCTGCTCCGGCGAAGGGCGGAGGGAGAAGGTGCTTGTGCAACTCTGGCTTTCAGTGGGACCCTGTAAACGGAATTTGTCAAGAAGTCAAGTGTGAACATGGAAAGGGATGCAAGCGTCGTAGTAAGAAGAAAACTCAACTTATTGGAGGCTTGGCATTTGCTGGGGCTGCCATGCTCGTTGGAGCCCTAATTACAGGATTGGTTTTTCATCACCGAACGAGGCGGCAGCGAAGAGGAGCCCAACTAAGCATGAATAGGGCACGTGGCATACTAAACGTTGACAACAATAGCGGCAAATCCGCGAAGATCTTCACCATGAAGGAACTAACCAAAGCCACCAACAACTTCAACAAGCACAACCTCCTCGGCGCCGGGGGCTTTGGCGAGGTCTTCAAGGGCACCCTCGACGACGGCACCGCCACCGCCATCAAGCGTGCCAGGGTCGGCAACACTCGCGCCGCCGACCAACTCCTCAACGAGGTACGCATCCTCTGCCAAGTCAACCACCGTAGCCTCGTCCGCCTCCTAGGTTGCTGCATTGAGCTTCCAGACGAACCCCTTTTAATCTACGAGTTTGTCCCCAATGGCACCCTCTTCGACCACCTCCATAACTCCACCGCCAGAAACCGCCTCCCTCTTCGTTGGCCCCACCGCCTCAAAATTGCCCACCAAACTGCCCTAGGGCTCGCCTACCTCCACGATTCGGCGATCCCTAGGATCTTCCATAGGGACATAAAAACAAGTAATATTCTCCTAGACGATGACCTCAATGCTAAGGTTGCTGATTTTGGGCTCTCGAGACTTGCGATGAGCGAGGCAAGCCACATAACGACGTGTGCACAGGGCACATTGGGGTATTTAGACCCAGAGTATTACTTAAATTTTCAACTTACGGATAAGAGCGATGTGTATAGTTTTGGAGTGGTGTTGTTGGAGATGTTGACGGCCAAGAAGGCATTGGACTTTGGGAGGGAGGAGGAGGATGTGAACTTGGTGGTGATGGTGAAGAGGGCGATGAGGAAGGGGAGGTTGATGGAGGTGGTGGATCCGACAGTGAGGGAGGGGGCTAGGAAGGTGGAGATGGAGAGCATGAAGGCGTTAGGGACTCTGGCGGCATCATGTTTAGATGATCAAAGACAGAAAAGGCCATCCATGAAAGATGTTGCTGATCAGATTGAACACATTCTTCAGATTGTTACTAATGCTATCGACGCTGAAGTTTCTCAAGTTTAA	1935	0.5478	MKIITHITLSLLLLTFSPLILSLTHCPPCGHTPVPYPLSTDPHCGDPSYKLRCTHGTLWLDTLHASSYPITSIDPKMQRFIIRSPGLAAPTACVSADFRTQGMWLDPTAPFNITSSNTLLLMNCSQEVLSLLWNCSSSSVCHSYIKGNAAMAEACGTSSTSICCTKRTGGSATEYRIRVREERCAAYVSLPNLDESKPASEWPEPGVEIEWEEPEEPPCKVAVDCNRLVNSACLPAPAKGGGRRCLCNSGFQWDPVNGICQEVKCEHGKGCKRRSKKKTQLIGGLAFAGAAMLVGALITGLVFHHRTRRQRRGAQLSMNRARGILNVDNNSGKSAKIFTMKELTKATNNFNKHNLLGAGGFGEVFKGTLDDGTATAIKRARVGNTRAADQLLNEVRILCQVNHRSLVRLLGCCIELPDEPLLIYEFVPNGTLFDHLHNSTARNRLPLRWPHRLKIAHQTALGLAYLHDSAIPRIFHRDIKTSNILLDDDLNAKVADFGLSRLAMSEASHITTCAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVLLEMLTAKKALDFGREEEDVNLVVMVKRAMRKGRLMEVVDPTVREGARKVEMESMKALGTLAASCLDDQRQKRPSMKDVADQIEHILQIVTNAIDAEVSQV	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa06g0366	644	SMART	serkin_6	350	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g0366	644	FunFam	Wall-associated receptor kinase-like 20	427	639	-	-
	Bisa06g0366	644	Gene3D	Phosphorylase Kinase; domain 1	325	426	-	-
	Bisa06g0366	644	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	323	426	-	-
	Bisa06g0366	644	Gene3D	Transferase(Phosphotransferase) domain 1	427	642	-	-
	Bisa06g0366	644	SUPERFAMILY	Protein kinase-like (PK-like)	333	624	IPR011009	-
	Bisa06g0366	644	Pfam	Wall-associated receptor kinase galacturonan-binding	26	81	IPR025287	GO:0030247
	Bisa06g0366	644	Pfam	Protein kinase domain	350	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g0366	644	CDD	STKc_IRAK	356	629	-	-
	Bisa06g0366	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Bisa06g0366	644	ProSiteProfiles	Protein kinase domain profile.	350	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g0366	644	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	24	631	IPR044652	GO:0004672
	Bisa06g0366	644	ProSitePatterns	Protein kinases ATP-binding region signature.	356	378	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa06g0366	Bisa-ChrBisa06	9132697	9138104	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa06g0366	26	637	Receptor kinase-like Gene Family	AT5G02070	54.180	0.0	676

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Bisa06g0366		Pkinase	2e-44	CL0016