Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0228 ATGGGGCAGCATATCCATCTGACGGTGGAGAAGTTGGATATCTTATCTCTATGCTTATCTGGTAGAAGTGACGTGGACCCAGATGAATATAATTCTGTAATCGACCAACTACCAGCGCTTGACAGTCGCCGGTTGGGCGGCTGCCATGGCTGCCATGTGCCTGGCAGCTGTAGGTCAGGCGGCTGTCAGGCGCCTAGTAGTTGCCGGTTGGCGACTGTCATGGCTGTCATGCGCCTGGCAGCTGCCGGTCCGGCGCTTGCCAGTCGCGCTTACAGACGGCTAGGCACTGGCTGGTTCGGTTGCTTTGTCAAATTCACTGGCTTCGTCGGTCGTACTCTCTATTGTCGTTTCTGGCCTTTCTCTTCCTCTAGTACTCTCGCTTTGATTCTCTTTCTTTCTCTTTCTCTCTCTCTCTGTTCTTCTTCGCGTTCAAACTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTATTCTTCTTCGTTGTCGTCGTCGTCGTTGTCCATACTAAGACAAGAATCAGTAAAGGAACTTAAAACAATGAAGAGTGGCAAGGGGAAGGGAGCAGCAAGGTACTCAAAGGAAGCATTGAAGCCTGTTGATGACAGAAAGGTTGGAAAGCGAAAGGCTCCAGTTAAACCTGAGAAAAGTAGTAAAAGGCAGGCCAAGGCCAAGAAAGATCCCAACAAGCCGAAAAGACCACCTAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAACGACCTTTAAGAAAGAAAATCCTGGTGTGAAGGCGGTATCAGCAGTTGGGAAAGCCGGGGGAGCAAAATGGAAATCCATGTCTGATGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGGCGAGTATGAGAAACTTATGAATGCTTATAATAAAAAGCAGGCTAGCTCAGCGGATGATGGAGACGATGAATCAGACAGGTCCAAATCTGAAATTCACGATGAAGAGGATGAAGAGGAGGCACATCAGGAGGAAGAGGAGGCGGAGGAGGATGAGGATGAAGATGATGACGATGACGATGATGACTGA 1068 0.4803 MGQHIHLTVEKLDILSLCLSGRSDVDPDEYNSVIDQLPALDSRRLGGCHGCHVPGSCRSGGCQAPSSCRLATVMAVMRLAAAGPALASRAYRRLGTGWFGCFVKFTGFVGRTLYCRFWPFSSSSTLALILFLSLSLSLCSSSRSNSSSSSSSSSSSSSFSSYSSSLSSSSLSILRQESVKELKTMKSGKGKGAARYSKEALKPVDDRKVGKRKAPVKPEKSSKRQAKAKKDPNKPKRPPSAFFVFLEEFRTTFKKENPGVKAVSAVGKAGGAKWKSMSDAEKAPYEAKAAKRKGEYEKLMNAYNKKQASSADDGDDESDRSKSEIHDEEDEEEAHQEEEEAEEDEDEDDDDDDDD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0228 355 MobiDBLite consensus disorder prediction 267 355 - -
Bisa06g0228 355 MobiDBLite consensus disorder prediction 309 329 - -
Bisa06g0228 355 MobiDBLite consensus disorder prediction 183 239 - -
Bisa06g0228 355 SUPERFAMILY HMG-box 227 307 IPR036910 -
Bisa06g0228 355 Coils Coil 318 347 - -
Bisa06g0228 355 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 185 338 IPR031061 -
Bisa06g0228 355 SMART hmgende2 234 305 IPR009071 -
Bisa06g0228 355 MobiDBLite consensus disorder prediction 330 355 - -
Bisa06g0228 355 CDD HMG-box_AtHMGB1-like 236 296 - -
Bisa06g0228 355 Gene3D High mobility group box domain 218 319 IPR036910 -
Bisa06g0228 355 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 304 IPR009071 -
Bisa06g0228 355 MobiDBLite consensus disorder prediction 279 300 - -
Bisa06g0228 355 MobiDBLite consensus disorder prediction 183 236 - -
Bisa06g0228 355 Pfam HMG (high mobility group) box 235 304 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0228 Bisa-ChrBisa06 5701345 5709297 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa06g0228 HMG_box 2.2e-23 CL0114