Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0214 ATGGATCCAGGAGGCTCAAACCGTGAGGAAGCCGAGATTGTTGAACTTGTTCATGAGCACTCACAAGAAGAGGAGCACAAAAAAAGGGGAGTGGAAGAAGCAATTTTACCAAATCGTGTTATTTACACACCCCACTCTCCCCTTCTTCCTCTTTCTCTGTTTCTTTCTACCGTTTTTCCGTATGCTTCTGTGAACCCTGCGATCTCTTCGATCCGTACTCATGGTCTCCTCTCTGCTCTCTCTCTCAGCTTCCAATCCTTTCTCCACATTCAATTGGTGCTAGTCTACTCCTTTCGAATCGATTCGCTTAGATCTCGGTATCGGCTTATGGAAATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGCGCTCGAAGAGCAGGAGTTGTCCGTGCTTTAACTCAAGATGTCGACGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACCTGTGCCTTTATGGACATCCAAATGAATCCTGGGAAGTAACTCTGCCGGCTGAGGAAGTACCACCTGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGATTGGCTTTCTCTGGTTGCTGTCCACAGCGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGGTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAATAAAGGACAAGCCCACTGTGGACAGTGGAAGCAAATCTAGGGGCAGCACTAAGAGGTCAAGTGACGGGCAAGTTAAAAGCAACCCCAAGTTTGCCGATGAAGGATACGAGGAGGATGAAGATGAGCACAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAACGCAGATGAATTTTGGATAGGCTGCGATATCTGCGAGAGGTGGTTCCACGGGAAATGCGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCTTCATGCAGCATGAGGCGAGGCAGGCCCTAG 1047 0.4766 MDPGGSNREEAEIVELVHEHSQEEEHKKRGVEEAILPNRVIYTPHSPLLPLSLFLSTVFPYASVNPAISSIRTHGLLSALSLSFQSFLHIQLVLVYSFRIDSLRSRYRLMEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0214 348 ProSitePatterns Zinc finger PHD-type signature. 295 341 IPR019786 -
Bisa06g0214 348 PANTHER CPG BINDING PROTEIN 115 347 IPR045104 GO:0006355|GO:0042393
Bisa06g0214 348 ProSiteProfiles Zinc finger PHD-type profile. 292 344 IPR019787 -
Bisa06g0214 348 MobiDBLite consensus disorder prediction 257 274 - -
Bisa06g0214 348 Pfam Alfin 118 243 IPR021998 GO:0006355|GO:0042393
Bisa06g0214 348 SUPERFAMILY FYVE/PHD zinc finger 283 346 IPR011011 -
Bisa06g0214 348 SMART PHD_3 294 342 IPR001965 -
Bisa06g0214 348 FunFam PHD finger alfin-like protein 287 343 - -
Bisa06g0214 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 342 IPR013083 -
Bisa06g0214 348 MobiDBLite consensus disorder prediction 249 285 - -
Bisa06g0214 348 CDD PHD_AL_plant 294 344 IPR044104 -
Bisa06g0214 348 Pfam PHD-finger 295 342 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0214 Bisa-ChrBisa06 5478269 5482668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0214 113 347 Alfin-like Transcription Factor Family AT5G05610 77.542 3.70e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bisa06g0214 Alfin 4.8e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g0221 10 4151298 4156588 Bisa06g0214 06 5478269 5482668 CCT