Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0119 ATGCTCATCGTCCTCGGTCTTCCGGGAGAAAATTATCGTTTCAGTCAATTAATGCAGCTATTCAGTGCTTATATTCTCAGTGGTAGCTTTTTTCTTCAATTTCAGGCTAGGGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCCAAACATTGGATGCTTGATAAGCTTGGCGGTGCTTTCGCGCCAAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGCCTGCCTCTGATCCTTATACTGCGAAACAGATTGAAGTATGCTCTTACATATAGAGAAGTTATTTCCATCTTGATGCAACGCCATATTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTGTTGGCTTCATGGACGTTGTATCTATTCCGAAGACTAATGAAAACTTCCGGCTTCTCTATGACACCAAGGGTCGTTTTCGCCTCCACTCTGTAAGGGATGACGAGGCAAAGTTTAAGCTCTGCAAGGTACGCTCTGTTCAGTTTGGGCAGAAGGGCATCCCCTATCTGAACACCTATGATGGCCGCACCATCCGATATCCAGATCCATTAATCAAGGCAAATGACACCATTAAATTGGACCTGGAAACAAACAAGATCACTGAGTTCATCAAATTTGATGTTGGAAACGTTGTTATGGTGACTGGAGGAAGGAACAGAGGTCGTGTTGGGGTCATCAAGAATAGGGAGAAGCACAAGGGAAGCTTTGAGACCATCCACGTACAGGATGCTACTGGCCATGAGTTCGCAACTCGCATGGGTAACGTTTTTATTATCGGTAAAGGGACAAAGCCGTGGGTGTCTCTTCCTAAAGGCCGGGGTATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGACTTGCTGCACAACATGAGGCAACTGCTTAA 897 0.4548 MLIVLGLPGENYRFSQLMQLFSAYILSGSFFLQFQARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHILVDGKVRTDKTYPVGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAQHEATA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0119 298 FunFam 40S ribosomal protein S4 156 206 - -
Bisa06g0119 298 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 36 288 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bisa06g0119 298 Gene3D - 209 279 IPR014722 -
Bisa06g0119 298 FunFam 40S ribosomal protein S4 209 279 - -
Bisa06g0119 298 Pfam Ribosomal family S4e 129 203 IPR013845 -
Bisa06g0119 298 Hamap 30S ribosomal protein S4e [rps4e]. 41 272 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bisa06g0119 298 Pfam S4 domain 81 124 IPR002942 GO:0003723
Bisa06g0119 298 Pfam RS4NT (NUC023) domain 37 73 IPR013843 -
Bisa06g0119 298 CDD KOW_RPS4 209 263 IPR041982 -
Bisa06g0119 298 Pfam KOW motif 211 244 IPR005824 -
Bisa06g0119 298 Pfam 40S ribosomal protein S4 C-terminus 246 293 IPR032277 -
Bisa06g0119 298 PIRSF RPS4a_RPS4e 35 275 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bisa06g0119 298 SMART s4_6 76 140 IPR002942 GO:0003723
Bisa06g0119 298 CDD S4 85 146 - -
Bisa06g0119 298 FunFam 40S ribosomal protein S4 35 151 - -
Bisa06g0119 298 ProSitePatterns Ribosomal protein S4e signature. 42 56 IPR018199 -
Bisa06g0119 298 Gene3D - 156 206 IPR038237 -
Bisa06g0119 298 SMART kow_9 208 235 IPR005824 -
Bisa06g0119 298 ProSiteProfiles S4 RNA-binding domain profile. 76 138 - -
Bisa06g0119 298 SUPERFAMILY Alpha-L RNA-binding motif 85 159 - -
Bisa06g0119 298 Gene3D - 35 151 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0119 Bisa-ChrBisa06 2298961 2300562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0119 36 296 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.954 0.0 509