Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0038 ATGGCAAATGGATTCTCGAAGGTTCTGGAGTCGAGGGATCTTCGCTTTTACGACGAGCTTGAATTTATGGAAAAAGGGAAAAATAATTTCGAGCTGGACAGAGTTCGCGTCGATGCGGATGATACGGCAACTTCGTCGGGATTTGAAGATTTTGATGAGATGAATTTCGATTTGGTCGACGAAAGGAAGATTTGTGTGAATTTCGTTTCTTCAGTGGGTGGTATTGTTTGTAGAGGTGAGACCAACCTTGCTTTCTGGGGATTCAGAGAGGTTTCTTCTGGAAGACAAAAGCCAGATATGAGAAAAAAGGGAGGCTCCCCTGGTGAAAAGCCAGAACCAGTTCGCACCCACCTGCGCAATATGATTATTGTACCCGAGATGATTGGGAGCATAATTGGAGTATACAACGGCAAGACTTTCAACCAGGTTGAGATCAAACCTGAGATGATTAGCCATTACTTGGCAGAATATAGAATTCACAATGCAGAGGATGTACTGGACGTTGGTTCTGGTGTTGTTGTTGTGCATGAAGATGCAATTCCACGCATTCATAGGCTCTGTTTCTTTGTTAATTTTAGAGCGCCTCAGAGTCCGATGACTGGAGCTTCCAAAGTGCGGCCCAGATCTGGCCGAACTCCGCTTCAGCCCAAGAACCCTCCCGCAAATCACATCCCCGATCCTCTCACAAACCCTAAACCCAAGCAAGAACCGATCAACGATTTCATCGGAGATTCCAACAAGGAGAATCATCCGACCAAGCTGGAGCCGCTGCCGCTGGATGCGTCCCTCGCTGAGGAACTGATCGCGATCAAGAAGAAGCTGGAGAGGCTGAGATCCGATAAAGAGAGGACGGAGCAAATGCTGAATGAGAGGGATTCGGTGTTGGATAGTCAGATGAAGGAGATGGAGCTCAAAGGTCAGTTTCAAAAGTGCCTCGAGATCGAAGTCGATAGGTTGTTCCGATTGAAGGAGCTCAAGTCTCACTGTATGAGAGTGTCTCCGATTAAATCTTTGAGAGCGAAGGAACAGGGAAAGATCTTTAACGAATCGCCATCGGAGGTGAAAAGCGAGGAAATGGTGGAATCCGGAGAGGAATCCGAAGTGCAGAGTCCGGGATCAGCATCTTCACGAGTTGATACGCAGAAAATCTGA 1152 0.4722 MANGFSKVLESRDLRFYDELEFMEKGKNNFELDRVRVDADDTATSSGFEDFDEMNFDLVDERKICVNFVSSVGGIVCRGETNLAFWGFREVSSGRQKPDMRKKGGSPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMISHYLAEYRIHNAEDVLDVGSGVVVVHEDAIPRIHRLCFFVNFRAPQSPMTGASKVRPRSGRTPLQPKNPPANHIPDPLTNPKPKQEPINDFIGDSNKENHPTKLEPLPLDASLAEELIAIKKKLERLRSDKERTEQMLNERDSVLDSQMKEMELKGQFQKCLEIEVDRLFRLKELKSHCMRVSPIKSLRAKEQGKIFNESPSEVKSEEMVESGEESEVQSPGSASSRVDTQKI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0038 383 Hamap 30S ribosomal protein S19 [rpsS]. 68 182 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 MobiDBLite consensus disorder prediction 340 383 - -
Bisa06g0038 383 MobiDBLite consensus disorder prediction 366 383 - -
Bisa06g0038 383 PRINTS Ribosomal protein S19 family signature 116 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 PRINTS Ribosomal protein S19 family signature 148 163 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 PRINTS Ribosomal protein S19 family signature 136 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 MobiDBLite consensus disorder prediction 197 256 - -
Bisa06g0038 383 SUPERFAMILY Ribosomal protein S19 106 158 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 MobiDBLite consensus disorder prediction 218 232 - -
Bisa06g0038 383 Gene3D 30s Ribosomal Protein S19; Chain A 89 163 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bisa06g0038 383 MobiDBLite consensus disorder prediction 342 362 - -
Bisa06g0038 383 Coils Coil 264 291 - -
Bisa06g0038 383 PANTHER MYELIN TRANSCRIPTION FACTOR 196 373 - -
Bisa06g0038 383 Pfam Ribosomal protein S19 107 159 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0038 Bisa-ChrBisa06 540387 548119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0038 100 159 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 86.885 2.65e-29 109