Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0019 ATGCTAAAAATCGCCAGAAACAAAGAAAGCATCCGATTTTCTGATTTGGTTGCTTTCTTCCCTGCTCTCTCTTTCCCTTCACAGAGCGAGGAAGGAGAGGTAAGGCTGGCAACCTCATCGAGACTCCATTACTCAGCTGAACCACAGCTTGAGAAAAAGGTCTCAATTCCCAATCATCCGAACCCTACCCTTCCAATCGAAACGTTTCGGCCTTTGGTTGTTCCCAATTATCCATTACCCCCGCAGGCGTCCCCAAATCATACAGTGCAATTGCATTTCATCCCATTGCGGTCTTTAACGGAGTTTCGCCTTCGTAGGGTTAGGGCATTTACCCGTATGGAAGAATCAGCTACCAATTCCGACATGTTCAGAGCTCCTCCGGGAACTTCTATTTCAAGAAGATATGGAATCCTATCCGCCTCTAATGTTTTTCAGGCACCATTATCGGCGTTATTGGAATACACGGGGATTCTGCGAAGCAGGTCCAATCACCAAGAAACTGAAAGCTTAATTAGCAACCGACTCTCTTCTGGAGCCCGTGACCATGTTCATAGTCGATTCGAGGCAGTCCCTAATGATGGGGAGATTTCCATCAGAATTATTGGGGCCGGAGAACATGATCTTGACGAAGAAGCCAATGGTTTCGCCGTTGGGCAGGTCAGGGAAGTCCTTTCCGATAATGACGTATCACTGCAATCCGTGGCTGCGACTAGTATAACCGCCACAACACTGCCACCAACTTCGGAGAGTCTGGGGGATTCAAGGTCTGAGCGTCTTTCGGTGGAGGGCATCTCCCAATCTGTAAATGTAACTGCGGATGCTGAAGCTGGTGACGGAGTTGGAGCCAATGGCAGGGACTCTTCCTACCAGAGATACGATATTCAGCAGGCTGCTCGCTGGATTGAGCAGGTGTTGCCTTTCTCTTTACTACTGTTGGTGGTCTTCATCCGGCAGCATTTGCAAGGGTTTTTTGTTACTATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTTTACGAAAGCAAACATCTCTGAAGGGAGAGAGGAGAATTCCTATTCTGGTCGGCATTTCTACTGCATTTTCACTTCATGTAATTGGCATATATTGGTGGTATCAGAATGATGATCTGTTTTATCCGTTGGTCATGCTTCCTCCAAAAGATATACCTCCTTTTTGGCATGCTATATTCATCATAATGGTGAATGATGCTTTGGTCCGTCAGGCAGCAATGGTACTTAAGTGTATTGTATTGATGTATTACAAGAATAGCAGAGGCAGAAGTTATCGTAAGCAGGGTCAAATGCTGACTCTAGTTGAGTACCTTCTTTTGCTTTACCGTGCTTTGTTGCCAACACCAGTATGGTATCGTTTCTTTTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTAATGACAGGATTGTATCTAACATTTAAGCTGACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAAGCATTGTCACGTAAAGAGGTGCACTATGGGGCTTATGCAACAGCAGAGCAGGTCAATGCAGCTGGCGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCGCCAATCTTACTTCGTTGTAAACACATTTTTTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACATGCCCATTGTGCAGAGCTTTGGTGAAACCTGCAGATCTCAGATCATATGGCGATGGTTCGACAAGTCTGTTTTTCCAGTTATTCTAA 1752 0.4515 MLKIARNKESIRFSDLVAFFPALSFPSQSEEGEVRLATSSRLHYSAEPQLEKKVSIPNHPNPTLPIETFRPLVVPNYPLPPQASPNHTVQLHFIPLRSLTEFRLRRVRAFTRMEESATNSDMFRAPPGTSISRRYGILSASNVFQAPLSALLEYTGILRSRSNHQETESLISNRLSSGARDHVHSRFEAVPNDGEISIRIIGAGEHDLDEEANGFAVGQVREVLSDNDVSLQSVAATSITATTLPPTSESLGDSRSERLSVEGISQSVNVTADAEAGDGVGANGRDSSYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTSLKGERRIPILVGISTAFSLHVIGIYWWYQNDDLFYPLVMLPPKDIPPFWHAIFIIMVNDALVRQAAMVLKCIVLMYYKNSRGRSYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATAEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSYGDGSTSLFFQLF 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0019 583 Pfam Zinc finger, C3HC4 type (RING finger) 520 563 - -
Bisa06g0019 583 SUPERFAMILY RING/U-box 516 565 - -
Bisa06g0019 583 CDD RING-HC_RNFT1-like 520 560 - -
Bisa06g0019 583 SMART ring_2 522 559 IPR001841 -
Bisa06g0019 583 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 113 583 IPR044235 GO:0061630|GO:1904294
Bisa06g0019 583 ProSitePatterns Zinc finger RING-type signature. 537 546 IPR017907 -
Bisa06g0019 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 570 IPR013083 -
Bisa06g0019 583 ProSiteProfiles Zinc finger RING-type profile. 522 560 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0019 Bisa-ChrBisa06 358193 364559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0019 113 583 C3H Transcription Factor Family AT5G01960 66.456 0.0 632