Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g0016 ATGGTTAATTCTGTGAGGCAAAATCAATCCTCTGCATCTGTGGAGGATAATCAGCTTGTTGATGGTGATACCCCTGCTTGGTTATTGCAGTATGCTAGTGCCCATACTACCCCTCGTGGGTCTCGAAGATGGCGGCGGGTTTTCTCCGATACTGATAGTGATGGTTTTGATAATTGGGGTTCTGTTTATGGTGAGAATGAATCAAACACAAGTGTTAGGCGGTACCGGGTCCCCAATGGCGAGACTGATTCTCTCTCGTTCGGTGCCTATGGAGGTGACTCTGAATTGTCTATGGATAGACATAGTTTTGTAGGTACAGGAATCTTTAACTTACCAGATGAGGGAGATGACTTTGACAGTGACACTGATATAGATCCTATGCATGCTGGCCTTAGCCACTGGAACTCTGATGATATGGAGGAGGAGGAGGAGGATGAGGACGAGGAAGAAGAGGAGGAGGAGGAAAGGGAATGGGAAGTGGCCGAGGCTGAGGAAGCTGAAGCCACTGCTCGGCTTCGAATATTTTTCACCTCAAGTCCAAGTGCAAGCAGTGGCCACATTAATTGGGATCACCGATTTAATTCTCCTGAATCTGAGGGAATATTTAGCCATAGAGTTAGGGACAGATGGCGAGCTTACAACGATCACAGCTTCACTAACTTGGAGGAGGTAGATTTACCACCGTATGGTGCAAATTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCATCTCGCTGAAAATGATAGCTCAAGACGGGGAGCGCCTCCTGCGGCTGTGTCTTTTGTGAATAGTCTGCCCCGTGTTGTTATCAGCAGGGAACATGAGAAGCATGATGAACTTGTGTGTGCCATTTGCAAGGATGCCTTAGCCCTAGGCACTGAAGTAAATCAGCTTCCCTGTTCTCACCTTTATCATGCCTGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCGTGCCCCCTTTGTCGTTATGAACTTCCAACGGATGATAAGGATTATGAGGAGGGGAAACGCAATATTGATGGTATAAATGAAAGCCATCAAGCGCAGGAGCTAGATGTGACAGATGACAGTTCCTCTGATGGAGCTGAAGCAGATGAAGAGTATAGTACTAATCAAGGTGGATTACAGCCGAGAGAGGTTGTGAACATGGATCCCGTTGTTAATTCTTCTGCAGTAAGGGGTGGTAGAGGAAGATGGCTTTTCCTTGCTGCTGCTCCAATTGTTAGTTTAGTGGGCATTGTTATTGTCTTATGGTTAGGTAACCCTCTAATTGAAGGAAGCAGACAAGTAGGCCACCGGAACGTAACTGGGCAAAATCAGCATCCGGTTCATGTTTCTGCCTCACCCAACCAAAGGGAGGATAGAAGCAGAAGATGGTGGTGCCTTTTCTAA 1410 0.4652 MVNSVRQNQSSASVEDNQLVDGDTPAWLLQYASAHTTPRGSRRWRRVFSDTDSDGFDNWGSVYGENESNTSVRRYRVPNGETDSLSFGAYGGDSELSMDRHSFVGTGIFNLPDEGDDFDSDTDIDPMHAGLSHWNSDDMEEEEEDEDEEEEEEEEREWEVAEAEEAEATARLRIFFTSSPSASSGHINWDHRFNSPESEGIFSHRVRDRWRAYNDHSFTNLEEVDLPPYGANFGDYLDARQFEDLLEHLAENDSSRRGAPPAAVSFVNSLPRVVISREHEKHDELVCAICKDALALGTEVNQLPCSHLYHACCILPWLSARNSCPLCRYELPTDDKDYEEGKRNIDGINESHQAQELDVTDDSSSDGAEADEEYSTNQGGLQPREVVNMDPVVNSSAVRGGRGRWLFLAAAPIVSLVGIVIVLWLGNPLIEGSRQVGHRNVTGQNQHPVHVSASPNQREDRSRRWWCLF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g0016 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 334 IPR013083 -
Bisa06g0016 469 SMART ring_2 287 327 IPR001841 -
Bisa06g0016 469 MobiDBLite consensus disorder prediction 348 386 - -
Bisa06g0016 469 SUPERFAMILY RING/U-box 267 335 - -
Bisa06g0016 469 Pfam Ring finger domain 287 328 IPR001841 -
Bisa06g0016 469 Coils Coil 135 169 - -
Bisa06g0016 469 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Bisa06g0016 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 332 - -
Bisa06g0016 469 MobiDBLite consensus disorder prediction 137 162 - -
Bisa06g0016 469 MobiDBLite consensus disorder prediction 114 164 - -
Bisa06g0016 469 FunFam E3 ubiquitin-protein ligase RING1-like 248 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g0016 Bisa-ChrBisa06 331509 332918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g0016 32 469 C3H Transcription Factor Family AT5G01980 47.945 6.62e-121 360