Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2985 ATGTCTAATCATTCCACTCTGAACCTCCAGCAACTGAGGCCTGCAACTGCGGGCACATCTTTTGAGGAGGTTGAGGATGACCCACTATGCAAAATGAAAAGGAAAAGGCATCCAAAGCTACTCAGAATCATACTCACAGACCACGATGCCACCGATTCTGACTCTTCCAGCGATGAAGACCGAGACAAACCTCTGAGACAACCCAGAGCGAAGAAGCACATCACAGAAATCACTATGCATCTTCCCTCATCCCATTCTCCGTCCTCTTCTCCCTCTTGTTTCCCAAAACAACACCCTCCCCACTTCAAGAGGCCCAAGAAGTCTCCCACCGCCTCCTCTCGCTGCCACCACAAATTCAGGGGCGTTCGCCAGAGGCCGTGGGGACGATGGGCCGCCGAGATCCGCGATCCGACCAGACGGAAACGGGTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCATCCGAGTACGATAGGGCTGCGCTCATGCTCAAGGGTCCGAACGCCGTTACCAACTTCCCCAACTCCGTCGTGACGGAAAAAGAAACAAAGCCGGCCTCAGTCTACAGCCCCAGCACCGACGGTTTTACCTCCTCCGAGACGGTGGCGTCTCCGACATCAGTCCTGGCCTACAACAGCGATTCAACGCCGTTCGACGGTTTCAGTTTCTTCGATGTGGATGTCTTCGGCTTCGATATTGACGTGCCGTTAAGTCTGACGGACATGAATGTGGTGCTGTCCAGCCAGAAGCAGCTAGGGAAGGAAGACTTCGGGGAATTTGACCCGGACGAATTCTTGAATCTTGACGTGGCCTAA 819 0.5458 MSNHSTLNLQQLRPATAGTSFEEVEDDPLCKMKRKRHPKLLRIILTDHDATDSDSSSDEDRDKPLRQPRAKKHITEITMHLPSSHSPSSSPSCFPKQHPPHFKRPKKSPTASSRCHHKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAASEYDRAALMLKGPNAVTNFPNSVVTEKETKPASVYSPSTDGFTSSETVASPTSVLAYNSDSTPFDGFSFFDVDVFGFDIDVPLSLTDMNVVLSSQKQLGKEDFGEFDPDEFLNLDVA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2985 272 MobiDBLite consensus disorder prediction 47 116 - -
Bisa05g2985 272 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Bisa05g2985 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 214 - -
Bisa05g2985 272 MobiDBLite consensus disorder prediction 1 17 - -
Bisa05g2985 272 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Bisa05g2985 272 MobiDBLite consensus disorder prediction 99 116 - -
Bisa05g2985 272 PIRSF PTI6 8 270 IPR017392 GO:0003700
Bisa05g2985 272 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Bisa05g2985 272 MobiDBLite consensus disorder prediction 47 78 - -
Bisa05g2985 272 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Bisa05g2985 272 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2985 Bisa-ChrBisa05 71561211 71562029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2985 39 214 AP2-EREBP Transcription Factor Family AT4G27950 45.304 2.79e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa05g2985 AP2 1.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0456 09 6556952 6560686 Bisa05g2985 05 71561211 71562029 CCT
Bisa05g2985 05 71561211 71562029 Bisa05g2985 05 71561211 71562029 ECH