Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2957 ATGGAGTTATCCTTGTTAACGGTGCTTGTTAATGGCATGTCCACGTTTTTGCAACTATCAGCTTCCAGAAACATGAAATCAGAACCTGTCTTGAAGTATTACCAAAAGGCAGAGGAGATACTTAAGTGGTTGAAGCCATTAATTGATGCAATTGCTAGTTCTGATTTAGCTTCTGATGAAGTGCTTAGGAGTATATTTGATGAACTGTTTCGGACTGTTGAGGAATTGAGGGAGCTTATTGAGAGCTGGCAACTATTATCTAGCAAAGTTTTCACTGTTATGCAAGTTGAATCCTTGTTATCTAAGATTCGGAATTTGGGACTCAATATTTTTGAGCAGTTGAAGGCTTCTCATCAATATCTCCCCAATGAATTGAGTTCTGAACATGTTGAGAAAATAAAGAATTTGGGACATGAAGAAACAACATCGATCATTAAGGAAGCTATTAGGGAAAAAGAGGAAGGTGTAGTGCCTAGTTCAGAAGTCCTGGAAACAATTGCTGAGGACCTGGGTCTGATGTCTAACCAGGAGGTTCTGATTGAGGCAATGGCCCTCGAAAAGTTGAAGGAAAATGCAGAACAAATTGAAAAAACTGCAGAAGCTGAATTTATTGACCAGGTAATTGCTCTTGTAACTCATATGCACGAGCGTCTTCTTAAGGAAGCCCAGAGCTGTAGCCCAGTTCCAATACCTCCCGATTTTTGCTGTCCTCTCTCTTTGGAGTTAATGACAGATCCAGTGATTGTGGCATCCGGGCAAACTTATGAGCGAGCTTTCATAAAAAACTGGATTGATCTGGGTCTTGCTGTTTGTCCAAAGACACGTCAAACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAAATGAACAATGTCAAGCTGGTTGATCCTACAAAGTCCTCAAACTTAAATCAAGCATCCTTCCTTCATGGGCACAGAGAATCTGTTGCAACCAAGGTTTTGCCTGTTTTAGGTCATTCCAGGGGCAAACAGTCATCCTCTCCTGAGTCAGCTCATTCTCATTCCATCAGTTCTGTGGATATGAATTTAACTTCTAGTCAAATTCACCAGGAGGGATCATCACCATTGCATCCCCATTCAACTACAGAAGGTTCCTTAAGTGGCATGACTATTGGACAGAGTTTGGATATTGCTAGAATACCACTAACAGGTTCAGATGAGATGTCTTCTAGCTTAGATGAAAGGAGTGTGGACTCAGTTAGTCAGCACCCAATGTCACCATCTAGAAGGGATTCTTCCGATGCCTTGAGCTTGGAAAGATCCCTACCCCATGTTAGAACTGCTTCTGATTCCAGTGCACTTTCTAGTGAAAATTTTCCTCAAGGTGCACAAGGTGATGGCAACAGTGCTTTCCAGCCATTATGCAATTCAAGTGACAGTGGAGATGCTTCTGGGGATGTAAATTCAGGGCCGGATACTGCCGGTGCTGCTACCTTGAATGCTCTGCAGAGAGAACCTGAGTTCTCACCTCAATTTGTAGAGGCAAGGCCTCAAAGGCAAAGTATAAGGCATCGGCTATCAGAGAGGCTTGTACCTAGGATGCCTTCTGCTACTGCTGCTGAAACTAAAGCTGATCTTTCTGGTATTGAAACCCAGGTCTGGAATTTGGTTGAAGACTTAAAGAGCTCTTCACTTGATAATCAAAGAGAGGCGACAGCTGAACTCCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTGCAAACTGTGGAGTTATTAACTTATTAGTTGGCCTACTCCAATCAACTGATGCTGAGATCCAAGAGAATGCTGTTACAGCACTTCTCAACCTATCAATCAATGATAATAACAAAATTGCACTTGCAAATGCTGGTGCAATTGATGCTCTGATTCATGTCCTTGAAATAGGAAATCCTGAAGCCAAAGAAAATTCAGCTGCCACGCTTTACAGCTTATCAGTGATGGAAGAAAACAAGATCAGGATAGGGAGATCTGGGGCAATTAGGCCACTGGTTGATTTATTAGCAAATGGAACTCGTAGGGGGAAAAAAGATGCTGCAACTGCTTTGTTTAATCTGTCAATATTTCATGAAAATAAGGGTCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTCGTGGAATTAATGGACCCAGCATCTGGAATGGTAGACAGGGCAGTGGCTGTTTTAGCAAATCTTGCTACAATTCCAGAAGGAAGAGCTGCAATTGGACAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAATTGGGTTCCGCAAGAGGAAAGGAAAATGCAGCAGCTGCTCTTCTACATCTTTGCTCAAACAGTACCAGGTTTTTAAGCATAGTGCTCCATGAAGGTGCTATCCCGCCATTAGTGGCTTTGTCACAGTCAGGAACCCCAAGGGCCAGAGAAAAGGCTCAAGCTCTGATTAACCAATTCAGAAGTCAAAGACACGGTGCTAGGAGAGGCTGA 2499 0.4298 MELSLLTVLVNGMSTFLQLSASRNMKSEPVLKYYQKAEEILKWLKPLIDAIASSDLASDEVLRSIFDELFRTVEELRELIESWQLLSSKVFTVMQVESLLSKIRNLGLNIFEQLKASHQYLPNELSSEHVEKIKNLGHEETTSIIKEAIREKEEGVVPSSEVLETIAEDLGLMSNQEVLIEAMALEKLKENAEQIEKTAEAEFIDQVIALVTHMHERLLKEAQSCSPVPIPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLAVCPKTRQTLAHTNLIPNYTVKALIANWCEMNNVKLVDPTKSSNLNQASFLHGHRESVATKVLPVLGHSRGKQSSSPESAHSHSISSVDMNLTSSQIHQEGSSPLHPHSTTEGSLSGMTIGQSLDIARIPLTGSDEMSSSLDERSVDSVSQHPMSPSRRDSSDALSLERSLPHVRTASDSSALSSENFPQGAQGDGNSAFQPLCNSSDSGDASGDVNSGPDTAGAATLNALQREPEFSPQFVEARPQRQSIRHRLSERLVPRMPSATAAETKADLSGIETQVWNLVEDLKSSSLDNQREATAELRLLAKHNMDNRIVIANCGVINLLVGLLQSTDAEIQENAVTALLNLSINDNNKIALANAGAIDALIHVLEIGNPEAKENSAATLYSLSVMEENKIRIGRSGAIRPLVDLLANGTRRGKKDAATALFNLSIFHENKGRIVQAGAVKHLVELMDPASGMVDRAVAVLANLATIPEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNSTRFLSIVLHEGAIPPLVALSQSGTPRAREKAQALINQFRSQRHGARRG 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2957 832 CDD RING-Ubox_PUB 231 283 IPR045210 -
Bisa05g2957 832 Pfam U-box domain 230 300 IPR003613 GO:0004842|GO:0016567
Bisa05g2957 832 FunFam RING-type E3 ubiquitin transferase 229 304 - -
Bisa05g2957 832 ProSiteProfiles U-box domain profile. 229 303 IPR003613 GO:0004842|GO:0016567
Bisa05g2957 832 Pfam Armadillo/beta-catenin-like repeat 663 700 IPR000225 GO:0005515
Bisa05g2957 832 Pfam Armadillo/beta-catenin-like repeat 620 659 IPR000225 GO:0005515
Bisa05g2957 832 Pfam Armadillo/beta-catenin-like repeat 581 618 IPR000225 GO:0005515
Bisa05g2957 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 309 IPR013083 -
Bisa05g2957 832 Gene3D - 727 829 IPR011989 -
Bisa05g2957 832 SUPERFAMILY ARM repeat 552 822 IPR016024 -
Bisa05g2957 832 Coils Coil 175 205 - -
Bisa05g2957 832 Gene3D - 624 726 IPR011989 -
Bisa05g2957 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Bisa05g2957 832 FunFam RING-type E3 ubiquitin transferase 534 828 - -
Bisa05g2957 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 590 632 IPR000225 GO:0005515
Bisa05g2957 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 714 IPR000225 GO:0005515
Bisa05g2957 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 713 754 IPR000225 GO:0005515
Bisa05g2957 832 PANTHER U BOX DOMAIN-CONTAINING 29 821 - -
Bisa05g2957 832 MobiDBLite consensus disorder prediction 402 429 - -
Bisa05g2957 832 SUPERFAMILY RING/U-box 224 307 - -
Bisa05g2957 832 MobiDBLite consensus disorder prediction 441 492 - -
Bisa05g2957 832 SMART arm_5 620 660 IPR000225 GO:0005515
Bisa05g2957 832 SMART arm_5 702 741 IPR000225 GO:0005515
Bisa05g2957 832 SMART arm_5 579 619 IPR000225 GO:0005515
Bisa05g2957 832 SMART arm_5 661 701 IPR000225 GO:0005515
Bisa05g2957 832 SMART arm_5 742 782 IPR000225 GO:0005515
Bisa05g2957 832 MobiDBLite consensus disorder prediction 402 492 - -
Bisa05g2957 832 MobiDBLite consensus disorder prediction 363 385 - -
Bisa05g2957 832 Gene3D - 549 623 IPR011989 -
Bisa05g2957 832 SMART Ubox_2 233 296 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2957 Bisa-ChrBisa05 71045385 71048835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2957 192 832 U-box Gene Family AT2G23140 60.433 0.0 690