Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2867 ATGACGTCACAGCTACAGCTGTCTTCGCCGTCGGTGGCGGCGGAGGCAGTGGCTTCAGCCATAGATTCTATTAACCGTTCATTTTCCGAGCTCCGCGACCACCACCACTCATTCGAGATCCCCCAGCGATTCTCGGGCTTGGCCCAGGGACTTCAGCTCGTCGTCAACCAGCTACTCCTCTCGCTTCAGTCGTCGTCGCCGGAGACTCTTCCGGCGTCGGTGCAGACCGCCTTGAAAGGAATGTCCGGCGATCTGTCCAAGGCGACGGAAATTGTGTCTGTTTATGAGAAGAGTAGCAAGATATTCGCGTTGATCAATTGTAAGTCCCTCTGCTCGTCCCTTCAGGAGCACACTGTTTCCATTGGAGGTTGGCTCGCCTTACTCGATTCGGAACTTCAAGATTACCCTGACCTCCGCAAGAAGGCTTCTGATCTCTCCGGAGACATGAAGCTGACACAGTTCAGGGTCACAGAGAACGAAGAGAGAGTTCAAAGTACACTGGAAAAAGAAGGCCAAGGAAGACAGACAAGCAAGGCCGTGCAGAGTGCTATTGTCATGGATTTAGCTCGTGCTTTGATGATTGAACCAGATGATCATATAGAGTTGTCTAACCAAATCAAGCTCTTCAAGGGTGACATATTGCGCTCAAATTCTGTATCGGAGCGGCGGATTTTGGTTTCCTTAGAAAGGATTTTGAATAATTGGTCTCTTGAGCCTGACATTGTCACTCGAAATTTCGATTTCGACCTTGAAGACGACGTCTCTAGTTCTCCCTTCAAAAGTTTTCTTTGCCCACTGACCAACGAAGTGATGAAGGACCCTGTAGTTCTAGAATCGTCTCAGACCTATGAACGGACTGCTATAATGTACTGGTTTGAAAGGTGTATTGAGGATGGACGTGACCCAACTTGTCCTGTCACAGGAGAGGTAGTCAAGTCCTTAGAGCTAAAACCCAACATTGGATTGGCAGGGGCAATTGAAGAGTGGGTTAGCCGAATTATTGAGAATCAAGTCAAATCTTCTGTGGAGCTCTTGGCTGAGGAGCCACTGTCTAATGATCACATTGAACGAGCTTTGGATATCATTTATAAGGTCTCAGAAGAGCATCCCACTAGCAGATATTTAATCAGAAATGCAGGCATTGTATTGCTGATAGTGAAGCTGCTTACTAATAGCTCAAAAACTATGGGATCACGGTTGAGAAGCAAAGCTCTGATGGCTCTAAGTAGCATGGCCAACGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAATATCACTAGATTGGCTGTACATAGTCTCATTGGTAGCTCGGAGAAAGAGAGAGAGTCCGCTGTCAAGTTATTACTGGAGTTCTCCAGTGATGAAGCTGGTTGCATAAGAATTGCATCGGAGAAAGGTGCATTAGTTCTCCTAACAAGTATGGCTGGAAATCTGGAGTTTCCTACTTTGTCCCATTTAGCTGAGGAAGTCTTAAGGCAGATGGAAAAGGTGGAGGATAATGTGCAACTTTTAGCAGCAGCTGGAAGATTTGAACCTTTACTTTCACGACTACGTGGTGGTCCTGACGGTTTAAAGATAGAGATGGCTTCTCTAATAGGAAGGATGGCCTTAACAAACAGCAATAAAGAACTACTTGCTAGGCAAAGTGCTGGAGTACTTGTTAAACTGTTGTCGAACACAGAAGGAAGAGGACCAAGTTTGGAAGCACTATATAACTTGTCAGGATTGGATGACAATGCAACCATCCTCGCTGAGTCTCCAGTCTTTCCATCTCTTATTGATGTTCTTTTTGATGACCAGGATCCTTCAGATGAGTTTAAGACATTAGCTGCTTCAACAATTGCAAATATAGTATCAAAGCCAGGGCGTTGGGAATTAGCATCTGCTGACAAAAAGGGGACCTCAATGCAATCAGAATACATTGTTTTCAAACTTTTGCAACTTCTAAACTCTGTGTCCTCTCAATGTCAAGTATCCGTTCTTCGCATTCTATTTGGAATTGCATCATCTCCACAGGCGTCAGAATCAGTTGCTTTGCATATAAAGTCTCGAGATGGCTTTAGAACGGTCATAGAATTTCTTGAGCACCCAGAAATCGAACTCAGAATATATGCTTTCAAGCTTGCAGGGATTCTATCTGAATTGTTCAGTCAAGATCTAGGGAATGAGCTGAGACTGTCCAACAAGCTCACCATGCTCAAAGAAAAACTGCTCGATAACCAGTCAACAGAGGATGAGAGATCAACTGCAGCACGTATACTTGCCAACCTTTCCCTCTCAGAAGATGAGGTAAAGTCACTTTTAGGTGGCGATTTCATGAGATGGAACGTCACCACTCTTAAGAACCAGAGGCGTGGGTCCAACCCTAGGATGTCAGAAACTGCGTCAGCCATGCTAGAAGGCCTTCTAGGTCTCTTACTTCACTTCACAAGGAACCTTGATGAGCAAACTCTTTCTGTTGTTAGAGAAAATCGTCTTATGACCATTTTCTGTGAACAGCTGGACCATACTTCTAAACCAAAGGTAAAAAGAATTGCTGCCCTTGGATTGAAAAACCTATCAGAGATTGGAAGGTCAGTTATTTCTAGGGACTCTGAACCTCCACCTCCTTCTGGGTTCTGCTCTATCTTAGTCTTCAAGTGTGGGGGTACCTCCACTAAGAATTCCACATGTCCATTTCACGACAGTCTCTGTGAAGAAGACAGTCAGTTGTGCCTGCTCAAGAGCAATTGCATAAAGCCTCTAAATGATCTCCTCAATGATAATGACACAAGTGTTCAAGTCGCTGCAGTGGAGGCACTTTCAACACTGGTATTAGATTTAGACAATACATCAAACAGTTTTGAGAGAGCAGTTGATGAGCTTGAGCATCTGGGTGTGGTCGATTCTGTGATCACTCTTTTCACAGAGGTTAGGACTGGGGAGCTTCAAGAGAAGACAGTTTGGATCATAGAGAAAATATTGAGAGCGGAAAATCACACACAGAGGCACTCACTTAATCAGTCTCTTGTGAGGGCCTTAGTTGAAGCCTTTAGGCATGGGAATACAAACACTAAGAGGCATGCTCAAGATGCTTTAACACATTTAAAGCAAATATCAGGTGTTAGTGGGAAGTCATCAAGTCAAACTCGACCAAGGAAGTAG 3147 0.4458 MTSQLQLSSPSVAAEAVASAIDSINRSFSELRDHHHSFEIPQRFSGLAQGLQLVVNQLLLSLQSSSPETLPASVQTALKGMSGDLSKATEIVSVYEKSSKIFALINCKSLCSSLQEHTVSIGGWLALLDSELQDYPDLRKKASDLSGDMKLTQFRVTENEERVQSTLEKEGQGRQTSKAVQSAIVMDLARALMIEPDDHIELSNQIKLFKGDILRSNSVSERRILVSLERILNNWSLEPDIVTRNFDFDLEDDVSSSPFKSFLCPLTNEVMKDPVVLESSQTYERTAIMYWFERCIEDGRDPTCPVTGEVVKSLELKPNIGLAGAIEEWVSRIIENQVKSSVELLAEEPLSNDHIERALDIIYKVSEEHPTSRYLIRNAGIVLLIVKLLTNSSKTMGSRLRSKALMALSSMANDEESKKIMLEGNITRLAVHSLIGSSEKERESAVKLLLEFSSDEAGCIRIASEKGALVLLTSMAGNLEFPTLSHLAEEVLRQMEKVEDNVQLLAAAGRFEPLLSRLRGGPDGLKIEMASLIGRMALTNSNKELLARQSAGVLVKLLSNTEGRGPSLEALYNLSGLDDNATILAESPVFPSLIDVLFDDQDPSDEFKTLAASTIANIVSKPGRWELASADKKGTSMQSEYIVFKLLQLLNSVSSQCQVSVLRILFGIASSPQASESVALHIKSRDGFRTVIEFLEHPEIELRIYAFKLAGILSELFSQDLGNELRLSNKLTMLKEKLLDNQSTEDERSTAARILANLSLSEDEVKSLLGGDFMRWNVTTLKNQRRGSNPRMSETASAMLEGLLGLLLHFTRNLDEQTLSVVRENRLMTIFCEQLDHTSKPKVKRIAALGLKNLSEIGRSVISRDSEPPPPSGFCSILVFKCGGTSTKNSTCPFHDSLCEEDSQLCLLKSNCIKPLNDLLNDNDTSVQVAAVEALSTLVLDLDNTSNSFERAVDELEHLGVVDSVITLFTEVRTGELQEKTVWIIEKILRAENHTQRHSLNQSLVRALVEAFRHGNTNTKRHAQDALTHLKQISGVSGKSSSQTRPRK 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2867 1048 SUPERFAMILY ARM repeat 351 624 IPR016024 -
Bisa05g2867 1048 SMART arm_5 369 413 IPR000225 GO:0005515
Bisa05g2867 1048 SMART arm_5 577 620 IPR000225 GO:0005515
Bisa05g2867 1048 SMART arm_5 899 940 IPR000225 GO:0005515
Bisa05g2867 1048 SMART arm_5 539 576 IPR000225 GO:0005515
Bisa05g2867 1048 SMART arm_5 993 1032 IPR000225 GO:0005515
Bisa05g2867 1048 SMART arm_5 814 856 IPR000225 GO:0005515
Bisa05g2867 1048 SUPERFAMILY ARM repeat 560 988 IPR016024 -
Bisa05g2867 1048 Pfam U-box domain 262 331 IPR003613 GO:0004842|GO:0016567
Bisa05g2867 1048 SMART Ubox_2 261 329 IPR003613 GO:0004842|GO:0016567
Bisa05g2867 1048 CDD RING-Ubox_PUB 262 316 IPR045210 -
Bisa05g2867 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 332 IPR013083 -
Bisa05g2867 1048 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 1038 - -
Bisa05g2867 1048 Gene3D - 333 859 IPR011989 -
Bisa05g2867 1048 Gene3D - 896 1042 IPR011989 -
Bisa05g2867 1048 SUPERFAMILY RING/U-box 252 332 - -
Bisa05g2867 1048 Coils Coil 488 508 - -
Bisa05g2867 1048 ProSiteProfiles U-box domain profile. 257 336 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2867 Bisa-ChrBisa05 68833710 68838503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2867 259 1037 U-box Gene Family AT1G20780 29.574 2.54e-87 297