Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2866 ATGTGCAGTGGTTCCGAGAGGAGACATACCCAAATTGGTTTTGCCATGGAGGGTGAATATGGGAAGCAACAAGGGTTGCGTCATAGATTTTCTGTTTTGCTTGAACTTTCTGCCTCGGATGATTTAATGGGTTTCAAAGATGCAATCGAAAAAGGAGGTCACAAAGTTGATGAGGTGGGTTTGTGGTATGGAAGGAGTATTGGCTCGAAGAAAATGGGTTATGAAGAGAGGATGCCTCTCATGATTGCTGCTATGTTTGGAAGCAAGGGTGTATTGGGTTATATTCTTGAAACGGGCCGTGTTGATGTTAACAAGACGTGTGGGTTGGACGGGGCTACTGCTCTCCATTGTGCTGTTGCCGGGGGATCTTCTGCTTCCCCTGAGATTGTCAAGCTTTTGCTTGATGCATCAGCAGATACCAGTGCTGTTGATGCCAGTGGCAACCGACCTGGTGACCTAATTGTCTCAGATGCTCATTCTATCTTCAGTTCAAGGAAGAGGGTTTTACAGGCCATACTAAAAGGTATTGATGGTGTCGATGAGGCATGTATTTCACCTAAGGAAACTGTTGGTCATAGCCAAATGGAGCAACAGCAACAGCCCCAGCAAGATATGACCACACCTTGTGTTTCAAAAGACGGGAGTGAGAAGAAAGATTATCCGGTTGACCTGTCTCTTCCGGACATAACGAATGGGATATATTGTACAGATGAGTTTAGGATGTATTCATTCAAAGTGAAGCCTTGCTCTAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCACCCGGGGGAGAATGCAAGGCGCCGTGACCCAAGGACGTATCATTATAGCTGTGTCCCTTGCCCTGAGTTTCGAAGGGGATCGTGCAACAAGGGAGATGCTTGTGAGTATGCACATGGAATTTTTGAAAGCTGGCTTCACCCTGCTCAGTATCGGACAAAGCTTTGCAAGGATGAGATCGGGTGCACTAGAAGAGTTTGCTTCTTTGCTCACAAGCCCGAGGAGCTTCGACCCTTGTATGCTTCTACTGGTTCAGCTATGCCTTCTCCTAGATCATTTTCACCTAGTGCTTCTCCATTGGAGATGGCATCAGTTAGCCCATTCACACTCGGTTCTCCCTCTGTCTTGACACCACCGTCATCAACACCGCCTTTGACTCCGTCTGGAGCATCATCTCCTTTGGGTGGAACTGCATGGCAGACCCAGTCTAATGGCACTGTCCCTACCCTGCAGCTGCCTAGAAGCAGATTGAAAACTGCTTTAAGTGCTAGAGATATTGATCTAGGCGTTGAATTGCTTGGACTTGAAAATCATCGACGCAGGCAGCAGCTGATGATGGACGAAATATCCGGTCTTTCCTCCCCATCCCGATGGAATAATGCCATGCCTAATAACACTTCTTTTCCTGTCTCTCTGGGTGATCTTTCTAGCGAGTTTAATAGGCTTGAAGGGTTGAAACCCACTAACCTTGAAAACATTTTTGGTTCCCTCGATCCGTCAGTTTTGCCTAAATTACAAGGAATTTCGCTGGATGCTGCAGGACCTCAATTACAATCTCCTACTGGAAATCACCACCTGCGAAACTATTCTTCCCGAGTTTCCTCTTCAAATGGGATGGTATCACCATCACCGTCATTTGGGGTTCATCCATCTGGGCCTCCAGTCACAGCAGCAGCTTTAAATCCAAGAACTGCTGCCTTTACAAAGCGGAGCCAGAGCTTTATTGAGCATAGTAGGGTGAACTCTCGCTCGGACCTTTCTTCACCTGCTGTTTCTGCAGCAATGAAGCCTTCTGCCTTCTCTGATTGGGGCTCCCCTAATGGAAAACTGGACTGGGCCATCCATGGAGAAGAGCTCAATAAGCTTAGGAAATCTGCTTCTTTTGGACTTCGAAGCAGTGCTAATCCTTTAACAATGGCTACGACAAGAGTAGTGCCAGCAAATATCGACGAACCAGATATGTCCCAGGTTCCTTCATTCACGAAGGATGCTCCACCAAGGGGATCAAATCAGTTTAGTGTTGAAGAGAAGCAACGGCAGCTGCAATGCCTTCTTAACAATGAAACCGATGTCATTCCTGCTTGGTTGGAGCAATTGTACATGGAGCAGGAATGCAACGGCTAG 2133 0.4707 MCSGSERRHTQIGFAMEGEYGKQQGLRHRFSVLLELSASDDLMGFKDAIEKGGHKVDEVGLWYGRSIGSKKMGYEERMPLMIAAMFGSKGVLGYILETGRVDVNKTCGLDGATALHCAVAGGSSASPEIVKLLLDASADTSAVDASGNRPGDLIVSDAHSIFSSRKRVLQAILKGIDGVDEACISPKETVGHSQMEQQQQPQQDMTTPCVSKDGSEKKDYPVDLSLPDITNGIYCTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRTYHYSCVPCPEFRRGSCNKGDACEYAHGIFESWLHPAQYRTKLCKDEIGCTRRVCFFAHKPEELRPLYASTGSAMPSPRSFSPSASPLEMASVSPFTLGSPSVLTPPSSTPPLTPSGASSPLGGTAWQTQSNGTVPTLQLPRSRLKTALSARDIDLGVELLGLENHRRRQQLMMDEISGLSSPSRWNNAMPNNTSFPVSLGDLSSEFNRLEGLKPTNLENIFGSLDPSVLPKLQGISLDAAGPQLQSPTGNHHLRNYSSRVSSSNGMVSPSPSFGVHPSGPPVTAAALNPRTAAFTKRSQSFIEHSRVNSRSDLSSPAVSAAMKPSAFSDWGSPNGKLDWAIHGEELNKLRKSASFGLRSSANPLTMATTRVVPANIDEPDMSQVPSFTKDAPPRGSNQFSVEEKQRQLQCLLNNETDVIPAWLEQLYMEQECNG 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2866 710 SMART ANK_2a 110 142 IPR002110 GO:0005515
Bisa05g2866 710 SMART ANK_2a 75 105 IPR002110 GO:0005515
Bisa05g2866 710 SMART c3hfinal6 278 304 IPR000571 GO:0046872
Bisa05g2866 710 SMART c3hfinal6 313 336 IPR000571 GO:0046872
Bisa05g2866 710 Gene3D - 33 174 IPR036770 -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 520 551 - -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 193 216 - -
Bisa05g2866 710 FunFam Zinc finger CCCH domain-containing protein 66 235 304 - -
Bisa05g2866 710 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 520 547 - -
Bisa05g2866 710 Pfam Ankyrin repeats (many copies) 79 134 IPR002110 GO:0005515
Bisa05g2866 710 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 303 IPR000571 GO:0046872
Bisa05g2866 710 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Bisa05g2866 710 ProSiteProfiles Zinc finger C3H1-type profile. 283 305 IPR000571 GO:0046872
Bisa05g2866 710 SUPERFAMILY Ankyrin repeat 63 154 IPR036770 -
Bisa05g2866 710 PANTHER UNKEMPT FAMILY MEMBER 35 666 IPR045234 -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 193 210 - -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 390 411 - -
Bisa05g2866 710 MobiDBLite consensus disorder prediction 376 411 - -
Bisa05g2866 710 Gene3D - 279 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2866 Bisa-ChrBisa05 68823499 68825631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2866 28 706 C2H2 Transcription Factor Family AT5G12850 38.835 1.37e-139 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa05g2866 Ank_4 7.5e-07 CL0465