Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa05g2864 | ATGGAAGAAACACAAGCTTCTTCATCATCATCATCTTCTTCTTCGTCTTCACAGTTTGAAGCAGAGGAAGCTAGCCATGAGCATTCAAGTGAGGAGAACCATCATCATCATCAGCCATCCATGTCATATAGGGTCAACATTTCCATGGCAGATCCACCTCTTACTTTCCTTAGAGATGATGTCTGGTCTTGCCTCGCTATTCTCCTCACCTTCTGGTTCTTCGCATCTATGGCTTTGATTCTTGGCATCTACGGATCAGAAACTTTACAATTGGGTCCTTACTCGTCATTTTTAATAGAAGTCAATTCAATATTTGTGGAGTCTATCAAGGAATGGATTTTCTACCTCAACAAAGAGTCTCAATTGGATATTTTTTACAATGTCAAGTCCCCAAGATTTTCACCTTTATCACTTGTCATTGCCAAAGGCAGAGAAGACCTTGTTGGGTGGATGGAAGACCCATCATCTACTAATACAACATTCTCTTGGAATAATATTTATGGAAGGGGCAAGATCACCCAAAAAATACCACATTCATTTTCTTACTATGTGGCACTTGGTAACTTCAACTCTGAAGATGTGGAGGTGGAATTGGAGTTCAATGTAAATGCAAATCTCTACAATACAACCAATGCAAGAAGCAAGTGTTCTCCACATAACAGTTTATGTAGATTAAACCTTTTACTTGCAGGGTCCAACTCTGCAGTCTTGACTACTCCTGGACCTAGAGAGGGTGTTTTTGCTGATGCATGGTTCCACGTGAAACTATCCTATGGACCAAGGTGGATCACATATCTAATAGGATCATGTATGATGATAGTACTCATTTTACATCTCTTGAAATTCTGCAATGTGTTCAAACGAAACGGTTCATACAGAGATGGGTACTTTCAACAAGTGCGAGTGGTTTCAGAAAGAACTCCCTTTCCAGCTAACAAAGACTATGATTCTTCAAGTTTGGGTTCTTCCTATGAATCTCTCTCTAGTGAGGAAGAAGAAGAAGAAGAAGATCTCACAAGGTGGCTTCAAGAGAAGCCATTGAAGGAAGGAGAAGCTGTTAATAGCCTTCAACATTTGTGTGTTGTTTGTTTTGATGCTTCAAGAGACTGCTTCTTTCTTCCATGCGGCCATTCTGCAACTTGCTTTGCTTGTGGAACAAAGATTGCAGCTGAAGCCAGTACTTGTCCCATATGCAGAAGGAAAATGAAGAAGGTGAGGAAAATTTTCACTGTATAA | 1236 | 0.4013 | MEETQASSSSSSSSSSSQFEAEEASHEHSSEENHHHHQPSMSYRVNISMADPPLTFLRDDVWSCLAILLTFWFFASMALILGIYGSETLQLGPYSSFLIEVNSIFVESIKEWIFYLNKESQLDIFYNVKSPRFSPLSLVIAKGREDLVGWMEDPSSTNTTFSWNNIYGRGKITQKIPHSFSYYVALGNFNSEDVEVELEFNVNANLYNTTNARSKCSPHNSLCRLNLLLAGSNSAVLTTPGPREGVFADAWFHVKLSYGPRWITYLIGSCMMIVLILHLLKFCNVFKRNGSYRDGYFQQVRVVSERTPFPANKDYDSSSLGSSYESLSSEEEEEEEDLTRWLQEKPLKEGEAVNSLQHLCVVCFDASRDCFFLPCGHSATCFACGTKIAAEASTCPICRRKMKKVRKIFTV | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa05g2864 | 411 | Pfam | Domain of unknown function (DUF4793) | 172 | 277 | IPR032010 | - | |
| Bisa05g2864 | 411 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bisa05g2864 | 411 | PANTHER | OS05G0521000 PROTEIN | 36 | 110 | - | - | |
| Bisa05g2864 | 411 | Pfam | Domain of unknown function (DUF4792) | 107 | 147 | IPR032008 | - | |
| Bisa05g2864 | 411 | MobiDBLite | consensus disorder prediction | 313 | 335 | - | - | |
| Bisa05g2864 | 411 | MobiDBLite | consensus disorder prediction | 21 | 39 | - | - | |
| Bisa05g2864 | 411 | Pfam | Zinc finger, C3HC4 type (RING finger) | 358 | 405 | - | - | |
| Bisa05g2864 | 411 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 324 | 411 | IPR013083 | - | |
| Bisa05g2864 | 411 | SUPERFAMILY | RING/U-box | 359 | 405 | - | - | |
| Bisa05g2864 | 411 | Coils | Coil | 324 | 344 | - | - | |
| Bisa05g2864 | 411 | SMART | ring_2 | 360 | 398 | IPR001841 | - | |
| Bisa05g2864 | 411 | ProSiteProfiles | Zinc finger RING-type profile. | 360 | 399 | IPR001841 | - | |
| Bisa05g2864 | 411 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa05g2864 | Bisa-ChrBisa05 | 68780427 | 68799126 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa05g2864 | 360 | 408 | C3H Transcription Factor Family | AT3G06140 | 32.653 | 3.46e-06 | 47.0 |