Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2837 ATGGAATCCGACGATTGTTACTTCAGCGGCGGGGAGGAGGAGGACGAGGTCTTGTTCAGCGACGATGGTAACGATGCGGAAGATTACGATTTCATCGACCATGATTCTGATAATTCCGAGGGCGATAGCCCGAATCGTCACCAGTTGCAAAACTATAAAGTCTTGAGTATAAGCGACATTCGTCAACGCCAAGAGGATGATATTACGAAGATATCAACTGTGCTATCCCTGTCAAAGGTTGCAGCTAGTATACTGCTTCGCCACTATAATTGGAATGTTGGGAAAGTACATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGCAGGGCTGTTGGCTTGTTGGAGAAACCTGTCGTGGAATATAAAGATGCAGGCGAGGTGACTTGTGGGATCTGTTTTGATACCTATCCCGGTGATGAGATGCTTGATGCTGGTTGTGGCCATCCTTTTTGTAGCTCATGCTGGCAAGGTTATATTAGCATAGCCATCAATGATGGTCCTGGATGTTTGTTGTTGCGATGTCCTGATCCGTCATGCAGTGCTGCTGTTGGTCAAGATATTATCAATTTACTGGCTTCTGCTGAAGAGAAGGAGAAGTATTCAACTTATTTTACTAGATCTTATGTTGAGGACAACAGAAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTATGGAGTTTACTGCTGGTGGTGGTGGAAACTATGATGTTTCATGCAGCTGCTCGTGTAGTTTTTGCTGGAATTGCACCGAAGAAGCACATAGACCAGTTGATTGTGATACTGTGACTAAATGGATATTGAAGAACAGTGCTGAATCTGAGAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCATGCTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGTATGCATATGACTTGCACACCACCTTGCAAGTATGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGAGCACGGTCAGACAACAGGTGGTTTTTATGCATGTAATCGTTATGAAGAAGTAAAATCAAATAAAGAGTTTCAAGAGGCTGAACTTCAAAGAGAGATAATCAAGAACTCTCTCGAAAGATATTATCATTATTATGAAAGATGGGCAAACAATCAATCATCCAGGCAAAAAGCTCTTTTAGACCTACAGCAAATGCAAACTGTGCATCTTGAGACGCTCAGTGACTTACAGTGTCAGCCTGAGTCACAGCTAAAATTCATAACAGAGGCCTGGTTACAGATTGTTGAATGCAGACGTGTTTTGAAATGGACATATGCTTATGGCTACTATATACCTGAGGAGGAGAAGGCTAAGAGAGAGTTTTTTGAATACTTGCAAGGTGAAGCCGAGGCTGGATTGGAACGACTTCATCAGTGCGCTGAGAAGGAACTGGAAGTTTACCTCACTGAAAATGATCCAGACAAAGATTTCAACAGTTTCCGCACTAAACTTTCTGGACTAACCAGTGTGACACGGACCTTCTTTGAGAATTTAGTAAAAGCTTTGGAAAATGGTTTATCAGATGTGAACTCTCATGCTGCGGCAACCAGAACAGCAGGCCCAAAGGCCCTAGGTAAAAGTTCTAGTAAGAAAAAAAGAGAGGGATAA 1617 0.4273 MESDDCYFSGGEEEDEVLFSDDGNDAEDYDFIDHDSDNSEGDSPNRHQLQNYKVLSISDIRQRQEDDITKISTVLSLSKVAASILLRHYNWNVGKVHDEWFADEEKVRRAVGLLEKPVVEYKDAGEVTCGICFDTYPGDEMLDAGCGHPFCSSCWQGYISIAINDGPGCLLLRCPDPSCSAAVGQDIINLLASAEEKEKYSTYFTRSYVEDNRKTKWCPAPGCEYAMEFTAGGGGNYDVSCSCSCSFCWNCTEEAHRPVDCDTVTKWILKNSAESENMNWILANSKPCPCCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGPWSEHGQTTGGFYACNRYEEVKSNKEFQEAELQREIIKNSLERYYHYYERWANNQSSRQKALLDLQQMQTVHLETLSDLQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYIPEEEKAKREFFEYLQGEAEAGLERLHQCAEKELEVYLTENDPDKDFNSFRTKLSGLTSVTRTFFENLVKALENGLSDVNSHAAATRTAGPKALGKSSSKKKREG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2837 538 CDD BRcat_RBR_ANKIB1 206 270 - -
Bisa05g2837 538 Coils Coil 338 358 - -
Bisa05g2837 538 Pfam IBR domain, a half RING-finger domain 278 326 IPR002867 GO:0008270
Bisa05g2837 538 Pfam IBR domain, a half RING-finger domain 198 261 IPR002867 GO:0008270
Bisa05g2837 538 CDD RING-HC_ARI6-like 126 187 - -
Bisa05g2837 538 FunFam RBR-type E3 ubiquitin transferase 262 512 - -
Bisa05g2837 538 CDD Rcat_RBR_ARI7-like 284 338 - -
Bisa05g2837 538 Gene3D - 257 512 - -
Bisa05g2837 538 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
Bisa05g2837 538 Pfam Ariadne domain 350 510 IPR045840 -
Bisa05g2837 538 SMART ibrneu5 198 261 IPR002867 GO:0008270
Bisa05g2837 538 SMART ibrneu5 274 335 IPR002867 GO:0008270
Bisa05g2837 538 MobiDBLite consensus disorder prediction 17 35 - -
Bisa05g2837 538 SUPERFAMILY RING/U-box 280 329 - -
Bisa05g2837 538 ProSiteProfiles TRIAD supradomain profile. 125 339 IPR044066 -
Bisa05g2837 538 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 427 IPR031127 GO:0004842|GO:0016567
Bisa05g2837 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 209 IPR013083 -
Bisa05g2837 538 FunFam RBR-type E3 ubiquitin transferase 123 212 - -
Bisa05g2837 538 SUPERFAMILY RING/U-box 198 268 - -
Bisa05g2837 538 MobiDBLite consensus disorder prediction 17 46 - -
Bisa05g2837 538 MobiDBLite consensus disorder prediction 514 538 - -
Bisa05g2837 538 SUPERFAMILY RING/U-box 125 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2837 Bisa-ChrBisa05 68342759 68368070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2837 1 528 ARIADNE family AT1G65430 70.833 0.0 783