Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2818 ATGAGCTCTTGTGTAGTCGATGAAAAGACCCTAATTGTGTCCTGTTCATGTGCCATCATCGAATCATTTAGATTTGACAATCACGACAATCGATCAAATGTGACCATCAGTTCTAGATTGATCCAGTGGTCACGCACGCATTGTGTGTGCCTCAAACAAAATGCAATTTGTCACTCAATAAGAGTCTGCTTTATAACTTGGCTTGATTTCCGCCCCGACGACGAACAAAACCCAAACGAAGAACAATACCCAGAAGTTTTCACGCCACTGCTCTGTTCTCACTCTGGTTGGACATTACTTCAATTTGTGCTCGTTCGTTCACTTCTCTGGATTCAAGTTGCAGCTACTTTACTGTTCACAGAGTCAATTTGTGGTTATCATTTCCAATTATTGGTTTGGTTCAACCCTGTTGTGTTAGCTTTCTATAGCTGGCTTAACAAGCAATTTCTTTCTGGTTATTTTTACACCTATGCGAAGATGAGTTCCTTCTCCATTACACGGAAAAAAACACCATTCCAGAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCTCGCTTATATGCTGAATTTGTTGAGTCATTTCAAGGGGATACCACTCCTGGTTCAAAGGCTTTTGTTCGAGGAGGAACAATCAATCCCAATGAAAAACTAAAAACAGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTGTCTGGTCCAAAGAAGGGAAGTAGGTATGTCCCGTCTTTTATACCTCCTCCTTTGGCAACCAAGGGGAGAGAATCTGAAAAGAAAAAAGAGGAGGAAAAGCCAAAGGAAAAAGAGAAAGGTAAGTCACGGAATATAGATCATTTTATGGAGGAGTTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGATCGTGAACATTGGTATGATGGGCGCAATGTGGAACATTCCACTGTCAGTCGCTTTGATGAACTACCTGACGACTTTGATCCAAGTGGAAAACTGCCAGGATCCTTTGATGATGGTGATCCACAGACTACAAATCTTTATGTTGGAAATCTCTCACCAAAGGTTGATGAAAATTTTCTTCTCCGGACTTTTGGAAGATTTGGACCTATTGCAAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTATATGAATATGAATTGAAAATTGGATGGGGCAAGTCTGTTGCCCTCCCATCACAAGCACTACCTGCACCCCCACCGGGGCATATGGCCATCAGGAGTAAGGAGGGTAGCACTGTGATCTTGTCTGGTCCATCAGGTCCACCAGTATCTTCTGTTCCAAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATGTGATTGATACCATGGCTTTGTTTGTTTTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGAGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACATACTATGTTTGGAGACTCTATTCATTTGCCCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGATTCCTCCATCTTTGCCAACAGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGAGGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTCTTGACAGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACTTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGGAGCATAACAGGTCGCATTACTGCTGAGGCCCTGAAGGAACGAGTGCTAAAGGTTCTGCAAGTGTGGGCTGATTGGTTTCTCTTCTCAGATGCTTATGTGAATGGATTACGGGCCACATTCCTTCGATCTGGGAACTCTGGTGTCACGCTATTCCATTCCATTTGTGGTGATGCACCTGAAATTGAGAAAAATATAAATTCTGAAGATACTATTGATGATGGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGTCGAGGAGCTGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTTGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGTCTGGAGGAGGCAGAGAAGCAAAGGGGTTATGAACTGGATGATGAATTGAAATATGCTCAGAACCAAGCAAGTTCAGGGAGATATTCAAGCAGTCAGAGAGAAACGAGCATTGAGCCTGAACCAGTGGGTTTCTCTGGATGGAACCATTATGGGGAGGATGGTTTGCAGTCACAAGGCAAAGGGTCAGTCCCTCTGGCGCAAACCCTGCCCATTCCTCAACCTGATATTAAACCCTTCACAAAAAGGGAGAAGAATGATCCTGTTTTGCCAGCCTCTAAATGGTCTCGAGAGGATGATGAGAGTGATGATGAACACAAGAGTAGGGGAAAAGGTCTGGGGTTAAGCTACTCGTCTTCCGGTAGTGAGAATGCTGGTGATGGTTATATGAAGGCAGATGAGTTGGAGTCTGCTGCTGATACCAGTATTTCAGTACAATCTGATAGTGGAATGAATGAAGAGCAGAGGCAGAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGAGAGAAAAGTTGCTGTACACAGGAAACGGCTACAAGCAGAGTTTGGGTTATCAGATTCTAGTGAAGATGGTCAAGGAAGAAGAACTTCTTCAGAGCGGAGGGATAGGCGTGATGATTCACATGATGTCTTAAGGAAACGCCACCGTAGCCGTAGTCGAAGTCATAGTCCACAACGAAAATCATCAGGCAGAGACAGGGAGAGGGAACTTGATGTAGACAGAGATCGAGATAGACACAGAGATAGAAGTTATGACTTTGACAGTGATAGAGGAAGGGACCGGGATCGGGAGAAAAGTGGAAGCAGAGAAAGGGATGATCACGATAGGGATAGAGGCAGAGACAGGGACAGGAGGAGACGGGTGAAATAA 3402 0.4397 MSSCVVDEKTLIVSCSCAIIESFRFDNHDNRSNVTISSRLIQWSRTHCVCLKQNAICHSIRVCFITWLDFRPDDEQNPNEEQYPEVFTPLLCSHSGWTLLQFVLVRSLLWIQVAATLLFTESICGYHFQLLVWFNPVVLAFYSWLNKQFLSGYFYTYAKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNEKLKTDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGRESEKKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWYDGRNVEHSTVSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVSSVPNQNSELVLTPNVPDIMVTPPEDDHLRHVIDTMALFVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDAPEIEKNINSEDTIDDGKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQASSGRYSSSQRETSIEPEPVGFSGWNHYGEDGLQSQGKGSVPLAQTLPIPQPDIKPFTKREKNDPVLPASKWSREDDESDDEHKSRGKGLGLSYSSSGSENAGDGYMKADELESAADTSISVQSDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVAVHRKRLQAEFGLSDSSEDGQGRRTSSERRDRRDDSHDVLRKRHRSRSRSHSPQRKSSGRDRERELDVDRDRDRHRDRSYDFDSDRGRDRDREKSGSRERDDHDRDRGRDRDRRRRVK 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 224 239 - -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 1069 1126 - -
Bisa05g2818 1133 CDD RRM_SR140 344 427 IPR035009 -
Bisa05g2818 1133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 426 IPR000504 GO:0003723
Bisa05g2818 1133 SUPERFAMILY ENTH/VHS domain 606 745 IPR008942 -
Bisa05g2818 1133 Gene3D - 602 749 IPR008942 -
Bisa05g2818 1133 Pfam cwf21 domain 979 1025 IPR013170 -
Bisa05g2818 1133 Gene3D - 978 1029 - -
Bisa05g2818 1133 PANTHER RNA PROCESSING PROTEIN LD23810P 159 1065 - -
Bisa05g2818 1133 Pfam CID domain 609 737 IPR006569 -
Bisa05g2818 1133 Gene3D Surp module 480 549 IPR035967 GO:0003723|GO:0006396
Bisa05g2818 1133 Coils Coil 979 999 - -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 569 602 - -
Bisa05g2818 1133 SMART cwf21_2 978 1027 IPR013170 -
Bisa05g2818 1133 Coils Coil 176 196 - -
Bisa05g2818 1133 CDD cwf21_RRC1-like 978 1027 IPR047491 -
Bisa05g2818 1133 ProSiteProfiles SAP motif profile. 796 830 IPR003034 -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 1036 1056 - -
Bisa05g2818 1133 SMART 558neu5 609 744 IPR006569 -
Bisa05g2818 1133 SUPERFAMILY RNA-binding domain, RBD 338 433 IPR035979 GO:0003676
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 905 938 - -
Bisa05g2818 1133 Pfam Surp module 492 544 IPR000061 GO:0003723|GO:0006396
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 576 602 - -
Bisa05g2818 1133 SMART rrm1_1 346 422 IPR000504 GO:0003723
Bisa05g2818 1133 SUPERFAMILY Surp module (SWAP domain) 468 549 IPR035967 GO:0003723|GO:0006396
Bisa05g2818 1133 ProSiteProfiles SURP motif repeat profile. 494 537 IPR000061 GO:0003723|GO:0006396
Bisa05g2818 1133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 419 IPR000504 GO:0003723
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 849 866 - -
Bisa05g2818 1133 SMART surpneu2 492 546 IPR000061 GO:0003723|GO:0006396
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 1022 1133 - -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 849 984 - -
Bisa05g2818 1133 ProSiteProfiles CID domain profile. 602 747 IPR006569 -
Bisa05g2818 1133 Gene3D - 256 428 IPR012677 -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 205 281 - -
Bisa05g2818 1133 MobiDBLite consensus disorder prediction 258 281 - -
Bisa05g2818 1133 Coils Coil 607 627 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2818 342 422 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 4.02e-06 49.3