Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2752 ATGACGGAAACGAATGGTGAATTCCAAAGTGATAAAGATTCATTGTCAGATCCTGCTCATCATCATCATCATCTACAGGCATGTACTGAAAATGAACAAAGTGATAAGTCCTCGTTGGTTCACCAATCCAGAAGACCAAGTCTCTCCTCGTTGCAAATACCAGCAAGGTCAGTAGAAATTGCATTATCGTCTTTTGCAAAGACAGATGTTCCATCACAGTCAAGTCCAGGTGCCAATCGAGGAGGCCTTCCCCCGAGGCCAAATTCAGCCAGAGTCAAGCCTTCCATAAGAAACTTACTTCCTCAGAGGAGCTTTATGGCAAAAAATTGTTCTCAGGATTGTGAAAGGACAGTTCTCATTGTTCCCGATACTCCCCCATCAGATGGTCCTTTAGACAAGCCTTCAACTTCAAGGTCCCTTTCCCTTAATAAGGTTTTGGTCCCTTCATCAACAAAAGCAGCAAATTCATTGCCAGTTACACCAATTGCGAATTTCGCTGCAGAGCCTGCAGGTGGAAGACATCTGGGAAGTGATATTGAATTAAGTAAAAAGGAAGTCAAGCACCACATGATTCGATCATTTTCAGTTCCAGTTAATGTCAGAGACTCTAGTTTAAAGCGTACAGATTCTAGGGGTTTGATCCGAGTAATTTCAGCAAAATCACATCCAGCAGCTGTTAATGGCCATTCAACTGATAATGTTTCAGTGCCAGAAATTGCCACTGAAGATGCTACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTAGGGGAAGGTGGGGATACTCTCAAGATGGAGTGCAGTTGTAAAGGTGACCTTGCTCTTGCTCACCAAGAGTGTGCAGTAAAGTGGTTTAGTATAAAAGGAAACAAGACTTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCAAGTGACACTGTTGAAAATCCAAAGGCCTCAACCTGCTGCTAGACACCAATCGAGTACTCAACGGCAGGGAGAAGTTCCTTATTACAGGATCTGGCAGGATGTACCAGTACTAGTCTTTGTCAGCATGCTAGCTTACTTTTGCTTTCTAGAGCAACTTCTGGTTTCGGATTTGGGTCCTCGTGCTCTAGCCATCTCACTTCCTTTCTCCTGCGCTTTGGGTCTCCTTTCATCTATGATTGCTTCGACCATGGTGAGCAGGAGTTACATCTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTCGCTCATGTATTTTATACTATACTTAATGTAAATGCGATTCTCTCGGTTGTCCTTTCCTCTTTCACTGGATTTGGAATTGCAATCAGCATAAATTCTATGCTTAAGGAATATCTGAAATGGAGATTAAGAAGGCAGATTCAATCGTTTATTCAGAGTCGGACGCAGCAGCAGCAGCAGGAACAACAAGGAACACATAATCCCCAGCAAAGGCAGCAGCAAGAGCAACGTCAATGA 1473 0.4358 MTETNGEFQSDKDSLSDPAHHHHHLQACTENEQSDKSSLVHQSRRPSLSSLQIPARSVEIALSSFAKTDVPSQSSPGANRGGLPPRPNSARVKPSIRNLLPQRSFMAKNCSQDCERTVLIVPDTPPSDGPLDKPSTSRSLSLNKVLVPSSTKAANSLPVTPIANFAAEPAGGRHLGSDIELSKKEVKHHMIRSFSVPVNVRDSSLKRTDSRGLIRVISAKSHPAAVNGHSTDNVSVPEIATEDATEDIPEEEAVCRICLVELGEGGDTLKMECSCKGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLQVTLLKIQRPQPAARHQSSTQRQGEVPYYRIWQDVPVLVFVSMLAYFCFLEQLLVSDLGPRALAISLPFSCALGLLSSMIASTMVSRSYIWAYACFQFAIVILFAHVFYTILNVNAILSVVLSSFTGFGIAISINSMLKEYLKWRLRRQIQSFIQSRTQQQQQEQQGTHNPQQRQQQEQRQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2752 490 ProSiteProfiles Zinc finger RING-CH-type profile. 247 309 IPR011016 GO:0008270
Bisa05g2752 490 SMART ringv_2 254 303 IPR011016 GO:0008270
Bisa05g2752 490 MobiDBLite consensus disorder prediction 1 53 - -
Bisa05g2752 490 CDD RING_CH-C4HC3_MARCH 255 303 - -
Bisa05g2752 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 312 IPR013083 -
Bisa05g2752 490 PANTHER OS02G0165000 PROTEIN 15 472 - -
Bisa05g2752 490 MobiDBLite consensus disorder prediction 66 93 - -
Bisa05g2752 490 MobiDBLite consensus disorder prediction 468 490 - -
Bisa05g2752 490 MobiDBLite consensus disorder prediction 13 30 - -
Bisa05g2752 490 SUPERFAMILY RING/U-box 251 306 - -
Bisa05g2752 490 MobiDBLite consensus disorder prediction 31 53 - -
Bisa05g2752 490 Pfam RING-variant domain 255 302 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2752 Bisa-ChrBisa05 65643834 65666979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2752 238 309 C3H Transcription Factor Family AT2G37950 48.000 1.06e-13 68.2