Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2701 ATGGTGTCCGAGATGGACTCTGATGAAGAAAAGAGGCTACCTTGCGATCAAGAAAACAACAAATCTGATGGGTTTGATCAGGAATTATCAGAGGAGGTAGAGAAGATGATAAATAAGGCATCTTGTATCATGAAGATCTCCGAAGGAAAGGCTAAAAAGATGGAAAAAGCAGCATCGGAATCAGGAATGCGAGAGTGTGATTTCTGTGGGAGAAAGTTCAGCTCAGGAAAAGCCCTAGGAGGTCACAGAAGGTATCATCTTCAAGCTCTCAAGAAAACAGGTCAATCTCTCAACAACAATAAGGTCAAAATTGTCCATTCCCAGTCTCAAAATTACAATCTCCCAGTTAATACGCCGAAAAAACCCATTCTTGTGGAAGAAAAACAACAGCTTGATGATGATGATCATGTCAAATTGGTGAGTGGAAAGTTATTATTAGGGCATTCTCGTTGTTGTCTTTGCAAAAAATATTTCCCGTCAAAGAAGTCATTGTTTGGTCACATGAGATCCCACCCCGAGAGGGAGTGGAGAGGTGTGAAACCCCCCTTTGTTCGTAATCGTAACAGTGTTAACATTGATCCTCCACTGGATCATCAGAAAGAAGAAGAAGAAGAAGAAGAAGAATTTGAAGATCTCAATCTTAATAACAACAACAACAACGGATCGTCGTCGTCAGCATCTGCAGAAGAAGACGTAGCAGTAGCAGCAGAAGCAGTTGATCTACTGGTGTCTTGTTCTTTGAGCTGGATCAAGAAGGACAAGAGAGGAAGACGAAGCATCGGAGCTATTGAAGCCGCGGAGACCCTCGTCATCCTCTCTCGTTATGGAAACAATCGTCCTTTTCTTCCTCCACCTTCTCCTCCTCCACAGGACGCTGCTCCACCAGTAATCCCGGTGAAGAAGAGAAAAAAGAATATAATCAACGATGTAAAAGAGGATAATGCTAAGGAAATCGGGAAGCTCAAAGCCATGACTAGAAAGAAAGAGAAGAAGAAGTTGAAAGAGAGTAAGTGTACTGCAGAAGAAATAGCCAAGAAAGAGGAATTAATGATTACGAGTTGTTATGAATGTAACATTTGTCATAAGTCCTTTTCAACGTTTCAGGCATTGGGGGGACACAGATCCAGACACAACAAAGGCAAGAACGTTGTCATTGTTGTTAGTACTAAGAAAGAAGAAGACGACGAAGAAGATCATGAAGATGAAGCAGCAGTACACAAGGTTTGCGTTAATGAAACTTTTTCAAGTACTAGTGCTCTTGGTGGCAGTAATAATAATGATTATAACAACATGATCATGAGGTCCCTTTCAACAGGATCGAGTCAAGAAGATGAAGAAGATGCATCCCTGAACAGTAGTGAAGACAGATTGTTATTCACTTGTGATAATAATGATAATGTTGTTGAAGAAGAAGACTTGGGAGAGGCAAGTCAATCTGGCTCAAAAATGTTGGATTTTGATCTCAATGAGCCATATGTTATGGAGGATGAACCATCTGATAAGTCACCTTCTTTCCAGTAA 1521 0.4089 MVSEMDSDEEKRLPCDQENNKSDGFDQELSEEVEKMINKASCIMKISEGKAKKMEKAASESGMRECDFCGRKFSSGKALGGHRRYHLQALKKTGQSLNNNKVKIVHSQSQNYNLPVNTPKKPILVEEKQQLDDDDHVKLVSGKLLLGHSRCCLCKKYFPSKKSLFGHMRSHPEREWRGVKPPFVRNRNSVNIDPPLDHQKEEEEEEEEFEDLNLNNNNNNGSSSSASAEEDVAVAAEAVDLLVSCSLSWIKKDKRGRRSIGAIEAAETLVILSRYGNNRPFLPPPSPPPQDAAPPVIPVKKRKKNIINDVKEDNAKEIGKLKAMTRKKEKKKLKESKCTAEEIAKKEELMITSCYECNICHKSFSTFQALGGHRSRHNKGKNVVIVVSTKKEEDDEEDHEDEAAVHKVCVNETFSSTSALGGSNNNDYNNMIMRSLSTGSSQEDEEDASLNSSEDRLLFTCDNNDNVVEEEDLGEASQSGSKMLDFDLNEPYVMEDEPSDKSPSFQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2701 506 Coils Coil 326 346 - -
Bisa05g2701 506 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 50 92 IPR044653 GO:0003700
Bisa05g2701 506 Pfam C2H2-type zinc finger 355 379 - -
Bisa05g2701 506 Pfam C2H2-type zinc finger 65 88 - -
Bisa05g2701 506 Pfam C2H2-type zinc finger 150 173 - -
Bisa05g2701 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Bisa05g2701 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 382 IPR013087 -
Bisa05g2701 506 SUPERFAMILY beta-beta-alpha zinc fingers 150 377 IPR036236 -
Bisa05g2701 506 MobiDBLite consensus disorder prediction 213 229 - -
Bisa05g2701 506 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Bisa05g2701 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Bisa05g2701 506 SMART c2h2final6 149 171 IPR013087 -
Bisa05g2701 506 SMART c2h2final6 64 86 IPR013087 -
Bisa05g2701 506 SMART c2h2final6 355 377 IPR013087 -
Bisa05g2701 506 MobiDBLite consensus disorder prediction 462 506 - -
Bisa05g2701 506 MobiDBLite consensus disorder prediction 186 229 - -
Bisa05g2701 506 MobiDBLite consensus disorder prediction 1 28 - -
Bisa05g2701 506 ProSitePatterns Zinc finger C2H2 type domain signature. 357 377 IPR013087 -
Bisa05g2701 506 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Bisa05g2701 506 MobiDBLite consensus disorder prediction 438 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2701 Bisa-ChrBisa05 64510018 64511755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2701 66 182 C2H2 Transcription Factor Family AT2G26940 36.752 3.74e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa05g2701 zf-C2H2_6 2.2e-09 CL0361