Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2697 ATGGTATTTATACAAGTCTTTTCTAGACACACTCATTTCTTCTTCTCTCTATCTCTCTTTGGGGCTAAGGATCTCACGGTCCTGTGCTCTGACTTCTCAAGGCTTTTATCTTTCGTATCCTTCGGTTATGTCTTTGCAGTGAAGATTGACAACGAATGCTATTTTGTGCTTGAAGTTTTGTTTGTGAAGTCTAGTGAAAGAGAAAGTATGTCAAGTGGAGCAACACACTGGTGTTATGAGTGCCGACAACCAATTGTGCTTGAAGGGAGAGAAGTTATTTGCCCTTACTGTCATGAAGGCTTTGTGCAAGAACTTAACGAGATGCAAGTCTTTCCACCTCATGATGCTTTTGGAGAGTTTCATCGCAGGCCTGAAATTTTTGATGCCATACATGCTTTTATGGCGTGGAGAGGTTCTGAACCGAGATCTGGGCTTGTAGATGCTGTTGATAGTTTCAGGAGGCAGAGAATAGCTAGACAATTCCAAAATCCTGGTGTTACAGCAAGGTCTGGTACCCCTGTTCCCGAACAGAGTCGGGGTTTTTTCAGTTCTGGTCCTTATTTGATAGTTCATGGTCCAGGGGGTGGTGCTAGGCATGTTGATTTTGGTGATTACTTTATGGGCCCTGGACTGGAAGGACTTATTGAACAGCTCACCGTGAATGACCGGCGAGGTCCGCCTCCAGCATCACATTCATCTATTGATGCAATGCCTACTATTAAGATCACACAGACACATTTTCGTGCTGATTCACACTGTCCAGTCTGCAAAGAGAAATTCGAACTAGGTTCTGAGGCAAGGCAGATGCCATGCGACCATATATATCACTCTGACTGTATTGTTCCTTGGTTGGTCCAACATAACTCATGTCCTGTTTGTCGTGTTGAGCTGCCACCGCAAGGACACAGTACTCATGGTAGTAGAAGTCGGGGAGGAAGGAATGGCGGTATCAGCAGTGACAATGTTAGCTCTAGGGGTGGGGAGAACGTCCAGCAGAACCAAGGAAGGAGAAATCCACTTTCAGTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACACTACTCATTTTGATGAGACTGGGGGAAGCAGCTCTTCATCCACTCAAGACCAGAATAATGGGACCGGTTATAGAGGATGGCCATTTTATTAA 1149 0.45 MVFIQVFSRHTHFFFSLSLFGAKDLTVLCSDFSRLLSFVSFGYVFAVKIDNECYFVLEVLFVKSSERESMSSGATHWCYECRQPIVLEGREVICPYCHEGFVQELNEMQVFPPHDAFGEFHRRPEIFDAIHAFMAWRGSEPRSGLVDAVDSFRRQRIARQFQNPGVTARSGTPVPEQSRGFFSSGPYLIVHGPGGGARHVDFGDYFMGPGLEGLIEQLTVNDRRGPPPASHSSIDAMPTIKITQTHFRADSHCPVCKEKFELGSEARQMPCDHIYHSDCIVPWLVQHNSCPVCRVELPPQGHSTHGSRSRGGRNGGISSDNVSSRGGENVQQNQGRRNPLSVLWPFRSSSSNTTHFDETGGSSSSSTQDQNNGTGYRGWPFY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2697 382 MobiDBLite consensus disorder prediction 299 382 - -
Bisa05g2697 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 300 IPR013083 -
Bisa05g2697 382 FunFam E3 ubiquitin-protein ligase RING1-like 217 300 - -
Bisa05g2697 382 Pfam zinc-ribbon 75 105 IPR039525 GO:0061630
Bisa05g2697 382 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Bisa05g2697 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 167 298 - -
Bisa05g2697 382 CDD RING-H2_RNF126-like 253 294 - -
Bisa05g2697 382 Pfam Ring finger domain 252 294 IPR001841 -
Bisa05g2697 382 SUPERFAMILY RING/U-box 233 300 - -
Bisa05g2697 382 MobiDBLite consensus disorder prediction 302 375 - -
Bisa05g2697 382 SMART ring_2 253 293 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2697 Bisa-ChrBisa05 64395727 64398580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2697 225 347 C3H Transcription Factor Family AT1G68180 40.000 1.92e-25 101