Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2665 ATGGAAAGTGTAAGGAAGGCAGGACCACTTAGGCCAAATGGGGGACCATTGCCATGCATGCATGATATTGAACACTGTGACTTTGAGGCCATAGGGCCAACTTTTTCTAAAAGACCCCCACCCTTACCGATATCCTTGAAGAAACCCACGACAATTGGTTATGTTTCTTTTGAAGAAACCTACCTAAAGCATCATCTCTTGGGACTATGGAAGCTCAAAGAGAATGTTGACTCCCTGGCTCTCAGCATTGGCCAACACCTTGTCTTCAACTTGCTCTCGGAAGATAGAATACTTGCTCTCATAACAAGACACAACATCACGTTTTCTGTTGGTAATCAGTGCCGAGGTTCCCTTAGAGCGTACTTGAGTTCTCACTGTGCTTGGCAGCATGAAATTGTGAAGCATTGTTTTGATAGAATGACTTCGGATCTTAACAAAACTGGTCCTGTGGAAAGAGACACTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTCACTTGCTAAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGTCCCTTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTATCAGGGAACGAGGAGAAACATCTTAAACTTAGCCATGTGTCCAGAATTATCTCTGGACAACGCACGCCAATCTTTCAAAGATATCCACGGCCCGAGAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACCTGATTTGTAAAGACAAAGATGAAGCTGAAGTTTGGTTTAGTGGCTTGAAAGCATTAATATCACGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAACAGTCCTCGAACTTACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGTGATCACCTTCGCCTTCATAGCCCATATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTCTGTATGCTGTTCCCCCCAAGGGGTTTTTCCCTCCAGATTCTGCTAGTGGTTCAGTCCACTCCGTGTCATCAGGAGGATCAGATAGTGTACATGGTCAAATGAAGGCAATGCCAATGGATGCTTTTAGAGTTAGCCTATCAAGTGCTGTGAGCTCATCCAGCCAAGGTTCTGGTCATGATGATGGTGATGCATTAGGGGATGTCTTCATTTGGGGGGAGGGCACAGGTGATGGTGTTTTGGGTGGTGGGACTCGAGTTGGTAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTGGTACTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGGGAAATTTTCTCCTGGGGTGAGGAATCTGGAGGTAGACTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCCTGTGGGGAGTATCATACATGTGCTGTGACCCTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTTGGGCATGGAAATCAAGTGAGTCACTGGGTCCCAAAAAGAGTAAATGGACCCTTGGAAGGCATGCATGTTTCATCTATCTCTTGTGGACCATGGCATACTGCAGTTGTAACCTCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTTTAGGTCATGGAGACCGTCAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACCGTGCGTGCTGCCTGTGGTGTTTGGCATACTGCTGCTGTAGTAGAAGTCATGGTTGGAAATTCAAGTTCCAGTAACTGCTCTTCAGGAAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCCAAACTTGTTCCAACCTGCGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCTTGTGGGCATAGTCTGACTGTTGCACTTACTACCTCAGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGTTGATGGGAAGCTACCAATGCGTGTTGAAGGAAGGCTTTCAAAGAGTTTTGTTGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACATGGGGGAAAGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCAACATTAGTAGAAGCTCTAAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGATCAGTCAATGTGTTCTGGATGTCGTCTGCCGTTTAATTTTAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCGAACCCCAATAAACCTTATCGTGTCTGTGATAATTGTTTCAATAAGCTAAGGAAAGCTATTGAAGGTGATTCTTCATCTCATTCTTCCGTGAGCAGAAGAGGAAGTATCAATCAGGGATCACTGGAGTTTATTGATAAGGATGATAAGTTTGATTCGAGATCTCGTAATCAAATTGCAAGATTCTCTGCAATGGAATCATTGAAGCAAGTGGAAAGCAGGGGTTCAAAGAAAAACAAGAAATTGGAATTTAACAGTAGTCGTGTCTCACCTGCTCCCAATGGAGGTTCCCAGTGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGTTCTAGAATTGTTTCTCGAGCAACATCCCCAATATCCAGACGGCCTAGTCCACCTCGTTCGACTACTCCAACCCCAACACTTGGAGGACTTACCTCTCCAAAGATAGTGGTGGATGATGCTAAGAGGACAAATGATAGCCTCAGCCAGGAGGTTATTAAATTAAGAGCGCAGGTTGAAAACCTGACTCGCCAAGCTCAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCAATTGCTGGTGAAGAAACTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCCCTTACCGCCCAGTTAAAGGAAATGGCTGAGAGGCTACCCGTTGGAGCAGCAAGGAATGTCAAATCACCGAGTCTTGCTTCCTTTGGTTCCAGTCCTGGTTGCAATGAAGTCAGCAATGCTTCTGTTGATCGATTGAATATTCAGACTAATAGCCTAGAACAAGACTTGATGGGATCAACCAACCAATTATTTTCGAATGGATCAAACACCATTAGTAACCGCATTGCAGGTCACAATAAACAGAGCCAGTCAGATGCAGCTAATAGAAATGGGAGCAGAACAAAAGAAAGTGAATCTCGTAATGAGACCGAATGGGTTGAACAGGATGAACCTGGTGTATATATCACACTCACCTCCCTACCAGGAGGTGCAATAGACCTGAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAGGCAGAACAATGGTGGGCTGAAAATCGGGCACGTGTGTATGAACAGTACAATGTGCGCATGGTTGATAAGTCTGCTGTTGGTGTTGGGAGCGAGGACCTGGCTCATTGA 3723 0.4378 MESVRKAGPLRPNGGPLPCMHDIEHCDFEAIGPTFSKRPPPLPISLKKPTTIGYVSFEETYLKHHLLGLWKLKENVDSLALSIGQHLVFNLLSEDRILALITRHNITFSVGNQCRGSLRAYLSSHCAWQHEIVKHCFDRMTSDLNKTGPVERDTEQAITALKKGAHLLKYGRRGKPKFCPFRLSNDESVLIWLSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASGSVHSVSSGGSDSVHGQMKAMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRQSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQVDGKLPMRVEGRLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAIEGDSSSHSSVSRRGSINQGSLEFIDKDDKFDSRSRNQIARFSAMESLKQVESRGSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQVENLTRQAQLQEIELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFGSSPGCNEVSNASVDRLNIQTNSLEQDLMGSTNQLFSNGSNTISNRIAGHNKQSQSDAANRNGSRTKESESRNETEWVEQDEPGVYITLTSLPGGAIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMVDKSAVGVGSEDLAH 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 685 736 IPR000408 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 1123 1154 - -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 922 936 - -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 1155 1171 - -
Bisa05g2665 1240 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 555 565 IPR000408 -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 737 788 IPR000408 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 967 996 - -
Bisa05g2665 1240 Gene3D - 152 270 IPR011993 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 268 325 - -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 738 785 IPR000408 -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 568 617 IPR000408 -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 632 681 IPR000408 -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 684 733 IPR000408 -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 462 510 IPR000408 -
Bisa05g2665 1240 Pfam Regulator of chromosome condensation (RCC1) repeat 513 565 IPR000408 -
Bisa05g2665 1240 Gene3D - 630 800 IPR009091 -
Bisa05g2665 1240 Gene3D - 376 629 IPR009091 -
Bisa05g2665 1240 Pfam Transcription factor regulating root and shoot growth via Pin3 1166 1221 IPR013591 -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 633 684 IPR000408 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 903 936 - -
Bisa05g2665 1240 CDD FYVE_like_SF 798 851 - -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 462 513 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 514 530 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 674 692 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 445 458 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 732 753 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 464 480 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 571 585 IPR000408 -
Bisa05g2665 1240 PRINTS Chromosome condensation regulator RCC1 signature 555 571 IPR000408 -
Bisa05g2665 1240 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 197 1071 - -
Bisa05g2665 1240 FunFam PH, RCC1 and FYVE domains-containing protein 1 623 794 - -
Bisa05g2665 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 861 IPR013083 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 1123 1171 - -
Bisa05g2665 1240 CDD PH_PLC_plant-like 152 262 - -
Bisa05g2665 1240 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 448 458 IPR000408 -
Bisa05g2665 1240 SUPERFAMILY RCC1/BLIP-II 400 790 IPR009091 -
Bisa05g2665 1240 MobiDBLite consensus disorder prediction 276 306 - -
Bisa05g2665 1240 FunFam Putative E3 ubiquitin-protein ligase HERC1 795 863 - -
Bisa05g2665 1240 Pfam Unstructured region between BRX_N and BRX domain 1091 1160 - -
Bisa05g2665 1240 SUPERFAMILY PH domain-like 153 261 - -
Bisa05g2665 1240 Coils Coil 1055 1075 - -
Bisa05g2665 1240 Pfam Transcription factor BRX N-terminal domain 1050 1083 IPR027988 -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 514 568 IPR000408 -
Bisa05g2665 1240 Pfam Pleckstrin homology domain 155 261 IPR001849 -
Bisa05g2665 1240 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 607 617 IPR000408 -
Bisa05g2665 1240 Pfam FYVE zinc finger 789 855 IPR000306 GO:0046872
Bisa05g2665 1240 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 793 855 IPR017455 -
Bisa05g2665 1240 FunFam PH, RCC1 and FYVE domains-containing protein 1 372 622 - -
Bisa05g2665 1240 SUPERFAMILY FYVE/PHD zinc finger 789 858 IPR011011 -
Bisa05g2665 1240 SMART fyve_4 787 856 IPR000306 GO:0046872
Bisa05g2665 1240 ProSiteProfiles BRX domain profile. 1167 1222 IPR013591 -
Bisa05g2665 1240 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 461 IPR000408 -
Bisa05g2665 1240 Coils Coil 999 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2665 Bisa-ChrBisa05 63630055 63650087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2665 1059 1231 Major Intrinsic Protein MIP AT1G31880 32.105 9.63e-17 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g2665 05 63630055 63650087 Bisa05g2665 05 63630055 63650087 ECH