Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2654 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGAATCCACAAATCAGTTGGTAATGAATGTGTTGATGCATCTTCAAGTGAGAAAGAATTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGTGCCAGTGGACTGCAAAATGAGGTTACTGCTGATGATAGAGTTGGTATGAGAGAGTCTAACTTTCATTGTACTGGAAGTGAAACAGGTATAGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAACCTATGAGCCATCAGAATGGGGCTGAATATGGGCAGGAATCACGTAGTGGATCAGACTCTAGAAATGCAGAAGAGGCTGAAGATAATTCATCTGACGGAAGAGGGGAAAGATTAGACTCAGAAGATGATGATGGACAAAAGGAAGCAGGAAAAGGTCCAAGAAACCATTCTGATGTTCCTGCCGAGGAGATGCTCTCTGATGAATATTATGAGCAGGAAGAGCAAAGTGACTCCATGCATTACAGGGGAGTTCATCAATCCACTGGATCAAATTCTTGGCCTCAAAGGATGTCTACTGCTACTAGTAGCCGTGTGAATAGGAACTCTAGGATTTCAGATGTTATTGAAGATGATGATGGTGATGATGGTGATGCTGATTACGAAGAAGAGGATGAAGCTGATGAAGATGATCCTGATGATGCAGACTTTGAGCCGGCCACAAGTGGTCGTTCTGCAAACAAGGATAAAAATTGGGAAGGTGAAGACTCAGATGATGATGATGACAGTGATGAGAATCTAGATGTTTCAGATGATGATGATACTTACTATGCAAGAAAACCTACAGTTAGGCAACGGGGTAAAGTTGGACGAAGTGTAAAACCTACCAGAGAACGCAAACCATCTGGTAGACAAAGAAGAGCTAAAACGTCTTTTGGAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAAAAAGAGAGGTGCAAATGCTCGCAAAAATAGTGGTCGATCTTCTGCAACTGCAAGTTTTTCTGGGCGAAACAGTGAGGTTCGCACATCCAGTAGGACAGTTAGGAAGAAAGTATCGTATGTTGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGCAAGAAGAAAAAGTCCCAAAAAGAAGAAATTGAAGAGGAGGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAAGGGAATGGCCGAGGAGGCGCAGAGTAATAATAGATCGACAGAGCCTGTTTTATGGAGTCACTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTACACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACAAAGAAAGTGGCGGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCTGAATACTTGGTCAAATGGCGAGGACTGTCTTATGCTGAAGTGACATGGGAGAAGGACATAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATATCCAGCGTAAGAAGAGCAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAATGGTTGAAGGGTGGGAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTCAACAGCTGGAGAAATGACACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCGGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGACATGAATGTCATTGTATATGTTGGTAATCGTGCTGGTCGAGAGGTTTGTCAACAATACGAATTTTATAATGACAAAAAGGTTGGCAGGCCTATACAATTTAACACACTGTTGACTACATATGAAGTAGTTCTGAAGGATAAAGCTGTCCTTTCCAAGATAAAATGGAATTATCTGATGGTTGATGAGGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTACACAACGCTTTCAGAATTTAGCACCAAGAACAAATTGCTCATCACTGGTACTCCACTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCACTTCCTTGACCAAGATAAGTTCAAGAACAAGGATGATTTTGTTCAAAACTACAAAAATCTGAGTTCGTTCAATGAGAATGAGCTTGCTAATCTACATATGGAATTGCGGCCTCACATACTCCGAAGAGTTATCAAAGATGTGGAGAAATCATTGCCCCCCAAAATTGAGCGTATTCTTAGAGTGGAAATGTCTCCTCTTCAGAAACAGTATTACAAGTGGATTTTGGAGCGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAATGCTGCAATCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGCGGGGATTCTAGAAGTAGTGACAGCAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTTCTTGTTAGATTGCATGAGACTAAACATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGCCGAGTATATGTCACTCAGAGGGTTTCAGTTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGCTACGACAACAGGCAATGGATCATTTTAATGCACCTGGTAGCGATGATTTTTGCTTCCTTCTTTCAACCCGAGCAGGAGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGAGCTAAGAAGAAGATGGTTCTTGACCATTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTAGAGAAGAAAGAAGCCAAAAAAGGAGGAGGTCTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGTAAGAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAGCAAGCGCATGAGTTATTGAGTGGCTTTAAGGTTGCTAATTTCTGCAATGGTGAAGATGATGGCAGTTTCTGGAGTCGTTGGATAAAACCTGAAGCAATAGCCCAAGCTGAAGAAGCTCTGGCTCCCCGTGCTGCAAGGAACATTAAAAGCTATGCGGAGGCCAATCAACCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGCTCCTGCAACACCGATGATTGAGGGAGCATCGGCTCAAGTGAGAAGTTGGTCATATGGGAATGTGTCTAAAAGAGATGCACTACGGTTTTCTCGTACAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTGATAGCTGCTGAGGTTGGTGGTGCATTTGTAGCAGCTCCGCCTGAAGCTCAAATTGAACTCTTAAATTCTTTAATTGATGGCTGTAAAGAAGCAGTGGAGCTTGGAAGTATGGACCCAAAGGGGCCTATTTTGGATTTTTTTGGAGTCCAAGTGAAGGCAAATGATTTGCTTAACCGTGTTCAAGAGCTACAACTCTTAGCAAAGCGCATTAGTCGATACGAAGATCCCATTGCACAATTTCGTGTTCTAACATATCTTAAACCTTCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGACTGCTTCTTGGAATTCATTACCATGGATTTGGCAATTGGGAAAGGATAAGATTAGATGAAAGGCTTGGTCTCATGAAGAAGATTGCACCAGTCGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCGAATTTGAGAGACCGTGCTAATGCCCTTTTGGAACAGGAACTTGCTGTTCTTGGCGGTAAAAATGCCAATAGTAAAGCTGGGAGCAAGGCTTCCAAGAAGGAGAGAGAACATCTTATGAACATTCCAGTGTCGCGTGGGCAGGAGAAGAAAAAATTAGGCTCTACTAAAGTTAATGTTCAAATGAGAAAGGATAGATCCTTGAGGTCCCAGAGGACTGAACCAATAGTGAAAGAAGAGGGTGAAATGTCTGACAATGACGAAGTATACGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTAATGGTTGTGGAAATGAAAACCTTGAATCGTCTTCACAAGTTGCAGACAACCAGTGCTCATCTTCCAAAGGAAAAGGTTCTTTCAAAAATCCGCAACTACTTACAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACAACACGGTTGTGGAATTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGACTACATCAAATCCATTCTAAACTAAAACAGGAGCAAGAAGATGAGGCAGGGGTTGGCCCCTCTCAAATCAATGGGTCAGTATCTGGTCCATTCGGCAGAAATGGTAACCCTAATTCCTTCCCTCGCCATGTGGATAGACAAAGAGGATACAAAAATGTGACTACCTACCAAATGCCAGAACCGGTTCATAAAACTGGAAAATCTGAGGCTTGGAAACGGAGGAGGAGAGTGGAAGGTGATGGTCATTTCCAAGGTCAGCCACCACCTCCTAGAACTATGGGTAATGGAAACCCAGTATCTGATCCTAACTCATTGGGGATCCTTGGGGCCGGACCATCTGATAGACGTTTTGTTAACGAGAAACCTTATAGGATGCGGCCGGGTGGGGCTCCTCCAAGACACGGCTTTTCTTCAGGTATAAAATAG 5265 0.4196 MAFFRNFSNETVSHSVLEEKGQGQNADRIHKSVGNECVDASSSEKEFDMNMDAQYHSDGEPDGASGLQNEVTADDRVGMRESNFHCTGSETGIVGRWGSTFWKDCQPMSHQNGAEYGQESRSGSDSRNAEEAEDNSSDGRGERLDSEDDDGQKEAGKGPRNHSDVPAEEMLSDEYYEQEEQSDSMHYRGVHQSTGSNSWPQRMSTATSSRVNRNSRISDVIEDDDGDDGDADYEEEDEADEDDPDDADFEPATSGRSANKDKNWEGEDSDDDDDSDENLDVSDDDDTYYARKPTVRQRGKVGRSVKPTRERKPSGRQRRAKTSFGEDESTAEDSESESDDDFKSMKKRGANARKNSGRSSATASFSGRNSEVRTSSRTVRKKVSYVESEESEEVDEGKKKKSQKEEIEEEDGDSIEKVLWHQPKGMAEEAQSNNRSTEPVLWSHLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVAEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWRGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDIQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGNRAGREVCQQYEFYNDKKVGRPIQFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDQDKFKNKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSRSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQAHELLSGFKVANFCNGEDDGSFWSRWIKPEAIAQAEEALAPRAARNIKSYAEANQPERSNKRKKKEPEPSERVQKRRKAEYSAPATPMIEGASAQVRSWSYGNVSKRDALRFSRTVMKFGNESQIHLIAAEVGGAFVAAPPEAQIELLNSLIDGCKEAVELGSMDPKGPILDFFGVQVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWERIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELAVLGGKNANSKAGSKASKKEREHLMNIPVSRGQEKKKLGSTKVNVQMRKDRSLRSQRTEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVVEMKTLNRLHKLQTTSAHLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIHSKLKQEQEDEAGVGPSQINGSVSGPFGRNGNPNSFPRHVDRQRGYKNVTTYQMPEPVHKTGKSEAWKRRRRVEGDGHFQGQPPPPRTMGNGNPVSDPNSLGILGAGPSDRRFVNEKPYRMRPGGAPPRHGFSSGIK 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2654 1754 CDD CD2_tandem 524 580 - -
Bisa05g2654 1754 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Bisa05g2654 1754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Bisa05g2654 1754 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Bisa05g2654 1754 Gene3D - 609 848 IPR038718 -
Bisa05g2654 1754 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Bisa05g2654 1754 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Bisa05g2654 1754 Coils Coil 1078 1098 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 266 283 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 187 215 - -
Bisa05g2654 1754 CDD CD1_tandem 411 491 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 109 414 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 1208 1241 - -
Bisa05g2654 1754 Pfam Domain of unknown function (DUF4208) 1528 1620 IPR025260 -
Bisa05g2654 1754 Gene3D - 398 526 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 1691 1754 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 18 43 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 1623 1659 - -
Bisa05g2654 1754 FunFam Photoperiod-independent early flowering 1 588 862 - -
Bisa05g2654 1754 SMART ultradead3 614 813 IPR014001 -
Bisa05g2654 1754 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 157 1643 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 1630 1648 - -
Bisa05g2654 1754 FunFam Chromo domain-containing protein 1 401 526 - -
Bisa05g2654 1754 Gene3D - 849 1079 IPR027417 -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 374 414 - -
Bisa05g2654 1754 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 109 123 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 1213 1237 - -
Bisa05g2654 1754 SMART helicmild6 964 1048 IPR001650 -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 124 169 - -
Bisa05g2654 1754 SMART chromo_7 524 583 IPR000953 -
Bisa05g2654 1754 SMART chromo_7 443 494 IPR000953 -
Bisa05g2654 1754 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 303 328 - -
Bisa05g2654 1754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1124 IPR027417 -
Bisa05g2654 1754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Bisa05g2654 1754 Coils Coil 1132 1159 - -
Bisa05g2654 1754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 221 248 - -
Bisa05g2654 1754 CDD SF2_C_SNF 925 1059 - -
Bisa05g2654 1754 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Bisa05g2654 1754 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Bisa05g2654 1754 SMART DUF4208_2 1516 1621 IPR025260 -
Bisa05g2654 1754 Gene3D - 528 580 - -
Bisa05g2654 1754 MobiDBLite consensus disorder prediction 354 373 - -
Bisa05g2654 1754 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Bisa05g2654 1754 Gene3D - 1345 1459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2654 Bisa-ChrBisa05 63412120 63434180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2654 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 26.275 1.23e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa05g2654 SNF2_N 3.6e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g2654 05 63412120 63434180 Bisa05g2654 05 63412120 63434180 ECH