Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2646 ATGATTAGTACAATATTGAGAAGATCTTCTTCTATGGTCTCGAGGCGCGCTTTCGCCGCCTCCTCGTTGATTGAGTCGGTCCTGCACCACCAGCACCACCTCAGCTCCTCTGCCGTAGCCGGAAATGGTGTGGTTGGTGGTGGTGAGCAACGGTTATTCTCCAGTTTGTTTGGTTCCAGTGGTTTCATCCCAAGGACCTTTCACGCGCAAGCGGGGCCTTTGAATTTCCGGTCGTCATTGGTTTCTTGTGCGGAGTTTGCTGTAGATCATTACCCTTTTGAAGACGGGTCTAAAGGAAACGATGATGATGGCCTTGAGATAGCGAAGCTTGGGATTGCTCAGGATATTGTGTCTGCTTTGGCCAAGAAAGGTATAACGAAGCTTTTCCCCATACAGAGAGCTGTTCTGGAACCTGCAATGCAAGGGCGTGATATGATTGGTCGAGCTAGAACGGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGATAAGATTATTCAATATAATGCCAAGCATGGACGAGGAAGGGATCCACTTGCTTTAGTTTTAGCACCAACTAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTCTATGAGTCAGCGCCCAATTTGGATACAATTTGTGTTTATGGGGGTACACCCATTTCGCGACAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTTGGAACACCTGGGCGAATCATTGATCTTCTTAACAGAGGTTCTCTAAATTTGAAGGACGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGTTTTCAGGAAGATGTTGAGAAAATCTTGGAGAGGTTGCCTCCCAAACGTCAAACTCTTATGTTCTCTGCAACAATGCCATCATGGATAAGGCAGCTTACCCGCAATTACCTAAAAAATCCACTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACACTCTACTCAATTGCATCAGATATGTATGGAAAAGCTGGAATTATTGGATCTCTTGTAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATAGATTGTCACATGCCATGGGAAAAAGCCTTAGGTGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTTAATGTTTTAGTAGCAACTGATGTTGCTTCACGTGGGCTTGATATACCGAATGTTGACCTTGTTATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGACGAACAGGTCGAGCTGGGAAGAAAGGAACTGCTATCCTTATTTATACTCAAGATCAAACAAGGGCTGTCAAGATTATTGAGCGAGATGTAGGCTGCAGATTTACGGAGCTACCAAGAATTACTGCTGAAGGCGGATCAGTAGAGATGTATAATGACATGGGTGGTGCTTTGGCAACTCTGGTCGTTTTGGTGGCCAATCAGGTGGTGGGTTTGGGGGATCCTTTGGTAATTCTTCTGGTGAAATGGGTAGATATGGTGGCTCTGGATCTGGTCGTTCTGGTTCATTTGGTGGCTCTGGGTCTGGTCGTTCTGGTTCCTTTGGTGGCTTTGGCTCTGGTCCATCAAGAAGTGGATTTGGCAGATCTGACGTAG 1686 0.4478 MISTILRRSSSMVSRRAFAASSLIESVLHHQHHLSSSAVAGNGVVGGGEQRLFSSLFGSSGFIPRTFHAQAGPLNFRSSLVSCAEFAVDHYPFEDGSKGNDDDGLEIAKLGIAQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQYNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVILDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQLTRNYLKNPLTIDLVGDSDQKLADGITLYSIASDMYGKAGIIGSLVTEHAKGGKCIVFTQTKRDADRLSHAMGKSLRCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGCRFTELPRITAEGGSVEMYNDMGGALATLVVLVANQVVGLGDPLVILLVKWVDMVALDLVVLVHLVALGLVVLVPLVALALVHQEVDLADLT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2646 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 465 IPR027417 -
Bisa05g2646 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 483 IPR001650 -
Bisa05g2646 561 SMART helicmild6 364 444 IPR001650 -
Bisa05g2646 561 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 496 - -
Bisa05g2646 561 CDD DEADc 116 311 - -
Bisa05g2646 561 FunFam ATP-dependent RNA helicase RhlE 96 313 - -
Bisa05g2646 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 310 IPR014001 -
Bisa05g2646 561 Pfam DEAD/DEAH box helicase 129 297 IPR011545 GO:0003676|GO:0005524
Bisa05g2646 561 Pfam Helicase conserved C-terminal domain 339 444 IPR001650 -
Bisa05g2646 561 SMART ultradead3 124 327 IPR014001 -
Bisa05g2646 561 Gene3D - 325 489 IPR027417 -
Bisa05g2646 561 CDD SF2_C_DEAD 346 453 - -
Bisa05g2646 561 Gene3D - 106 314 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2646 Bisa-ChrBisa05 63234558 63239621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2646 103 476 Eukaryotic Initiation Factors Gene Family AT3G19760 32.908 5.69e-70 229