Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2613 ATGGCGAAAGCAATCCCGAAGGCGTTGATTCAAGACCCCAGAGCCAAACACGTCGCCTTCTCGAAGCGTCGCAATGGAATTTTCAAGAAAGCCAGCGAGCTCTGTACTCTGTGTGCTGTGGAGATGGCCATTATCGTCTTTTCACCAGGCGGAAAAACTTACTCCTTCGGTCATCCATCTCCGAATGCAATTATTAACAGATTCACCAATTCTGTCGACTCATATACTTCAGCCATCGGAGAAGATCAAAGGTCTCAAAAAAAAGCTGTGGTGCGTCGAACTTGCAAGCGATACTCTGATCTGAATGCGCAATTGAACGCAGAGAAGATACGAGGGAAGGATCTGAAGCGAATGATGATGAAGATTCCAGATATCGATAAGATGAGGAGAGATGAATTGCTTCAGTTTAAGGCATCGTTGGAACATCTCAAATTGAAAGTTTTTTGTCATAAAATGGAGCTTTTGACTCAGAAGCCTATGGATCTGAGTTTGACGTTAGGGGGTATATATTCTACTGGAAATGCTGCAAATTTCGCCAAATATTCTGCGAGGGGAAATATTTGTTTGAGTCACTCTCTTGCTCCTTGA 588 0.4354 MAKAIPKALIQDPRAKHVAFSKRRNGIFKKASELCTLCAVEMAIIVFSPGGKTYSFGHPSPNAIINRFTNSVDSYTSAIGEDQRSQKKAVVRRTCKRYSDLNAQLNAEKIRGKDLKRMMMKIPDIDKMRRDELLQFKASLEHLKLKVFCHKMELLTQKPMDLSLTLGGIYSTGNAANFAKYSARGNICLSHSLAP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2613 195 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Bisa05g2613 195 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Bisa05g2613 195 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Bisa05g2613 195 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Bisa05g2613 195 PANTHER MADS BOX PROTEIN 8 147 - -
Bisa05g2613 195 FunFam Agamous-like MADS-box protein AGL62 12 78 - -
Bisa05g2613 195 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bisa05g2613 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bisa05g2613 195 SUPERFAMILY SRF-like 8 72 IPR036879 GO:0003677|GO:0046983
Bisa05g2613 195 ProSiteProfiles MADS-box domain profile. 10 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2613 Bisa-ChrBisa05 62511450 62512037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2613 3 141 Type I MADS-box Gene Family AT2G34440 36.552 3.52e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa05g2613 SRF-TF 3.8e-22 No_clan