LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g2610	ATGGTGAAGGCAACTGAGAAGAAGGCGTTGATCCAAGACACCAAAGCCAAAAGTGTCACCTTCTCAAAGCGTCGCTCTGGAATTTTCAAAAAAGCCAGTGAGCTTTGTACATTGTGTGGTGTAGAGATGGCCATCATTTTCTTTTCACCCACTGGCAAAGCCTACGCCTTTGGAAACCCTTCTGTTGAAGCCATCATTAATAGGTTTTCCAATGACTCTGCAACTTTTGATGCTTATGCTTCTAATGGAGAAGATGGGTGTCAAGACAGAGCAAGATTGAGTGATCTTTACAAGGAGTACTTTGATCTGGTGGCTCAAGTTGAAGCAGAGGAGAAGAGACGAGAGGAATTGAAGCAACGAAGGAGCAATTATCCAAATATTAGTAAGATGAATAGGAATGAATTGCTTGAGTTTAAGGCATCGTTGGAGAATTTCAAACAGCTTTTAGATCGAGAAATGGAGGTTTCAAGTAAGAAGCTTGGGAGTTCAAGTCCAACAGAGGATGGTATGTGCTCTGTGTGA	522	0.4215	MVKATEKKALIQDTKAKSVTFSKRRSGIFKKASELCTLCGVEMAIIFFSPTGKAYAFGNPSVEAIINRFSNDSATFDAYASNGEDGCQDRARLSDLYKEYFDLVAQVEAEEKRREELKQRRSNYPNISKMNRNELLEFKASLENFKQLLDREMEVSSKKLGSSSPTEDGMCSV	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g2610	173	PANTHER	MADS BOX PROTEIN	7	149	-	-
	Bisa05g2610	173	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	SUPERFAMILY	SRF-like	9	73	IPR036879	GO:0003677\|GO:0046983
	Bisa05g2610	173	Coils	Coil	100	120	-	-
	Bisa05g2610	173	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	57	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	Gene3D	-	14	82	IPR036879	GO:0003677\|GO:0046983
	Bisa05g2610	173	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Bisa05g2610	173	FunFam	Agamous-like MADS-box protein AGL62	13	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g2610	Bisa-ChrBisa05	62483368	62483889	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g2610	1	164	Type I MADS-box Gene Family	AT5G60440	37.097	8.87e-28	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Bisa05g2610		SRF-TF	3.5e-23	No_clan