Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2608 ATGATGATCAAAGACACCATTGCCAAAACTATTATGTTCTCAAAGCGTCGCTCCGAAATTTTCAAAAAAGCCAATGAGCTTAGTACATTATGTGGTGCAATGATAGCCATTATCATCTTTTCATCCACTGGCAAAGCCTACACCTTTGGAAACCCTTCTGTTGAAACCATCATTGACAAGTTTTCCAATGACTTCACAACTTCTGAAGCTTATGCTTCTAATGGAGAAGATGGGTTTGAAGAAGAAACAAGACTAAGTGAGCTTTACAAGCAATACTCTGATCTAGTTGCCCAAGTTGAAGCAGAGAATAAAAGAGGAGAGGAATTGAAGAAAAGAAGGAGGAATTATCCAGATGTTACTAAGATGAATAGGGATGAATTGCTTGAGCATAAGGCATCATTGGAGGATTTTAAACAGTTTTTAGATGACGAGATTTTAAGCAAGAAGCATGGGAGTCCAAGTTCTATGTGA 471 0.3779 MMIKDTIAKTIMFSKRRSEIFKKANELSTLCGAMIAIIIFSSTGKAYTFGNPSVETIIDKFSNDFTTSEAYASNGEDGFEEETRLSELYKQYSDLVAQVEAENKRGEELKKRRRNYPDVTKMNRDELLEHKASLEDFKQFLDDEILSKKHGSPSSM 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2608 156 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bisa05g2608 156 PANTHER MADS BOX PROTEIN 2 139 - -
Bisa05g2608 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 49 IPR002100 GO:0003677|GO:0046983
Bisa05g2608 156 Gene3D - 7 74 IPR036879 GO:0003677|GO:0046983
Bisa05g2608 156 PRINTS MADS domain signature 30 51 IPR002100 GO:0003677|GO:0046983
Bisa05g2608 156 PRINTS MADS domain signature 15 30 IPR002100 GO:0003677|GO:0046983
Bisa05g2608 156 Coils Coil 85 112 - -
Bisa05g2608 156 SMART madsneu2 2 52 IPR002100 GO:0003677|GO:0046983
Bisa05g2608 156 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2608 Bisa-ChrBisa05 62391641 62392111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2608 3 139 Type I MADS-box Gene Family AT2G24840 34.228 6.07e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa05g2608 SRF-TF 1.5e-19 No_clan