Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2562 ATGGAGTCAGAGGACAAGAATTTGTTGGATACTAATTCAGCCTTTGGTGCAACAGTTAGTCGTGCTTTCGTTGTAGGTTTATCTGGAATTTCTCCATTTAATGTTACCAAAAAAGTGGGAAGCAGTGCATGGGGGATACCGCGTAGGGTTGATGCATATCGTGATTCTAGTGATGCTAGCTTGTTTTCTAGTTCTCTGCCTGTTCTTCCGCATGAAAAGTTGAATTTTCCTGATTCAGAACATTATGGCCAACCGTTTGATGATAACATTCTAATATCTGATAAAGTTCACAAAGAAGTTGAGGGATATGATCCCCTTGAAGATGTTGAAACCAATGCAATTGGAAGCATGCTTCCTGATGACGAAGAAGAACTATTAGCTGGGATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAAATGGAGGATCTGGATGAAAATGATCTGTTTGGTAGTGGAGGGGGGTTTGAAATGGACTGTGAGCCCCAAGAGAGTCCCACTATTGGCATGTCAAAAATAAGCATTTCTGATGGAGTTGCTTCAAATGGTATTGGCCATTATGCACTTCCTAATGGTGTGGGACCAGTGACTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGATTCTGAATTAAGATTACTATTTGAGCAATATGGGGATATTAGGACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGTACTGCAATGCGTGCTTTACAAAATAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGAGAACCCCTCAGAAAAGGATATTAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCGTCGGTATCAAATGATGATCTTCGTCTAATATTTGGGTTGTATGGGGAGGTCAAAGAGATAAGGGAAACACCATACAAGAGACACCATAAATTTATCGAATATTATGATGTTAGAGCAGCTGAGGCAGCTCTCAAAGCATTAAATCGGAGTGATATTGCTGGGAAACGGATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGACGAAATTTCATGCAACAACTGAGTCAAGAGCTGGAAATAGATGAAGCACGGACTTTTAGACATCAAGTAGGCTCACCATTGGCCAATTCTCCTCCTGGTAACTGGGCACGATTTGCAAGTCCAGTTGAACATACTTATTTAAGTTCTTTTGGAAAGTCTCCTGCTTTGGGTCATGCCAGCCCAGTGAGTAGCAACCACTTGTCAGGATTGGCCACAGTTCTTTTCCCTCATGCATCAAACTCTACAAAGATGGCACCAATTGGCAAGGACTTAGGAGGGGTTAATAATTCAAATCAGATAATTACGAACTCTGCATCACAAGGAGCAACTTTTCAGAATTCAGTGTCCTTTCCTGAGCAAAAATTATATGCAAGTTCTAGATCCGTTTCTACTTTTGGTGAATCAAGCTTGAGCTCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTACATCTACAACTTCCACAGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCAGCTGGGCTCCCATTCGTATATAGTGGTGAGAAGCAGGGTTTTCCATATACTAGTCATCACAGTTCTTTTCTTGGTTCGCGCTCTCGTGATTATGTGGGATCAGCTTCATCTGGCCTTCCTTTTGATAGGCATTTTAGCTACTTCCCAGAGTCACCAGAAGCTTCTTTCACGCGTCCGGTTGCATTTGGGAGTTTAAATCGCAATGATGGGAATTTTATGCGCATAGGTGCTCGTGCAGCTGCAGGGGTTGGACTTTCAGGAAATACAACTGAAATAAATTCATCTAGTTTCGGAATGATGTCACCACCTATGCATGGTTCCTTGGTTCTTGGAAATGGTTCTTATCCTGGACTAGGTGTAAATAACAATGAGGGGTTCGCTGAGCGTGGTCGGAGTTGGCGACCTGAAAATATTGGGACCCAAATTGGTAGCAAGATGCAGTATCAGCTTGATCTGGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTGCTGTCTGCAATTGATGAGAACCACCGGGGTGCTTATGATTTTCTCTACTTGCCGATTGACTTTAAGAACAAGTGTAACGTGGGTTATGCCTTCATCAATATGGTGTCTCCTTCACATATCATTCCCTTCTATAAGGAATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCTCTGGCATATGCACGAATCCAGGGAAAGGCTGCACTTGTGAACCACTTTCAGAATTCAAGCTTAATGAATGAGGATAAGTGGTGCAGGCCAATCCTCTTTCAGTCAGAGGACCAAGAGACTGTTGACCAGGAACCTTTATTGTCCTGCAATCTGAATATATGCATCCGTCAACCAGATGGGTCATACTCAGGAGATTTGTTGGAGAGCCCAAAGGGCGATTTGGATGACAAGCTGTGGCAAAATTAA 2598 0.4219 MESEDKNLLDTNSAFGATVSRAFVVGLSGISPFNVTKKVGSSAWGIPRRVDAYRDSSDASLFSSSLPVLPHEKLNFPDSEHYGQPFDDNILISDKVHKEVEGYDPLEDVETNAIGSMLPDDEEELLAGIMDDFDLSRLPSQMEDLDENDLFGSGGGFEMDCEPQESPTIGMSKISISDGVASNGIGHYALPNGVGPVTGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKENPSEKDINQGTLVVFNLDPSVSNDDLRLIFGLYGEVKEIRETPYKRHHKFIEYYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNFMQQLSQELEIDEARTFRHQVGSPLANSPPGNWARFASPVEHTYLSSFGKSPALGHASPVSSNHLSGLATVLFPHASNSTKMAPIGKDLGGVNNSNQIITNSASQGATFQNSVSFPEQKLYASSRSVSTFGESSLSSSSIGTLSGPQFLWGSTSTTSTEHSNTSAWSSSSAGLPFVYSGEKQGFPYTSHHSSFLGSRSRDYVGSASSGLPFDRHFSYFPESPEASFTRPVAFGSLNRNDGNFMRIGARAAAGVGLSGNTTEINSSSFGMMSPPMHGSLVLGNGSYPGLGVNNNEGFAERGRSWRPENIGTQIGSKMQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGAYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDKWCRPILFQSEDQETVDQEPLLSCNLNICIRQPDGSYSGDLLESPKGDLDDKLWQN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2562 865 FunFam Protein MEI2-like 1 293 388 - -
Bisa05g2562 865 Gene3D - 293 384 IPR012677 -
Bisa05g2562 865 CDD RRM2_MEI2_like 293 363 - -
Bisa05g2562 865 FunFam MEI2-like protein 5 isoform 2 198 292 - -
Bisa05g2562 865 SMART rrm1_1 295 363 IPR000504 GO:0003723
Bisa05g2562 865 SMART rrm1_1 707 783 IPR000504 GO:0003723
Bisa05g2562 865 SMART rrm1_1 210 278 IPR000504 GO:0003723
Bisa05g2562 865 Pfam RNA recognition motif 2 705 801 IPR007201 -
Bisa05g2562 865 SUPERFAMILY RNA-binding domain, RBD 707 792 IPR035979 GO:0003676
Bisa05g2562 865 CDD RRM1_MEI2_like 208 284 IPR034453 -
Bisa05g2562 865 CDD RRM3_MEI2_like 708 793 IPR034454 -
Bisa05g2562 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 361 IPR000504 GO:0003723
Bisa05g2562 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 275 IPR000504 GO:0003723
Bisa05g2562 865 PANTHER RNA RECOGNITION MOTIF-CONTAINING 59 823 - -
Bisa05g2562 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 282 IPR000504 GO:0003723
Bisa05g2562 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 367 IPR000504 GO:0003723
Bisa05g2562 865 Gene3D - 198 292 IPR012677 -
Bisa05g2562 865 SUPERFAMILY RNA-binding domain, RBD 206 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2562 Bisa-ChrBisa05 61052548 61059326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2562 206 351 Eukaryotic Initiation Factors Gene Family AT1G71770 26.452 6.16e-09 57.8