Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2523 ATGGCTCTTCGGTTTCTTCTTACATGGCAAGGATGCTCTTGTAAGGCTGTTATGTTTAATGTCATTATGTGTGGTTCCACTTCCATCTTGAGAAACATCCTCGACCCGTCTGGTTTAGTCACCGTCGTCTGTCGCAGAGGTCTGGTTGATCGCTGTGCTCCTGCTGGTGAAGCTGATTCAAAGGCACTTGCTGTTTCTCAGGATATCAATCAGAAGGGTGGGGACGGGGCAGTGGGGATGTGTTCTGCAGACTCCATGGACTTTAACCTTGTTGATATAAAGTCAAGGGCCAGCCCATTTGATGTTACTAGCCATTTCCATGGCAACTTGGCGCTAAAGGCTGAACTGAGGAAGCTACCCTTTTCTGCAACAGTTGTGACATGGTCTTGCTCACTTCATTCGACCTTTTCATCTGCTTCTTTGTCCTTGACATTTGACATGGGCCTTTTTTGTGGCCTACAAGCGTTCTTCTGTCTTGTTACAGTCTGGTTCTTTTCTATTTGACTGTCAATGGGAAAGAATGAGTTTCTCACGCCAAAGGCAATTGCTAATCGAATCAAAGCAAAAGGTCTGCAGAAGCTTAGATGGTACTGCCAGATGTGCCAAAAACAATGTCGAGACGAAAATGGTTTTAAGTGCCATTGCTTGAGTGAGGGTCACCAGCGACAAATGCAAGTCTTTGGGCAAAACCCAAATCGCATTGTTGAGGGCTACTCTGAAGAATTTGAGAAAACGTTCCTTGAGCACATGAAGCGCAGCCACAGATTCAGTCGTGTGGCAGCAACAGTTGTGTACAATGAGTACATTAATGACAGGCACCACATTCATATGAATTCCACCCAGTGGGCTACACTAACTGAGTTTGTCAAGTATTTGGGTCGGACCGGCAAGTGTAAGGTGGAAGAAACACCAAAGGGTTGGTTTATCACATACATAGATAGAGATTCAGAGACTCTCTTCAAAGAGAGGATGAAGAATAAGAGAATAAGGGCAGACATGGCAGAAGAAGAGAAGCAAGAGAAGGAGATAAGGAAACAAATTGAAAAAGCTGAGCAGTTAATGCAGCCATCTACCACTGGGTCTGATCAGTCCTTACAGGCGGAGCTTCCAAGGGAATTAAAGTTGGAAGATGGAGTTAAGATTGGATTTTCTCTTGGTTCATCAGCAAAACCTGTAACCAAGGAAAAACACGAGGGACCGAAGATATTGTTTGATGAGGGCGAGGATGCAAGAAATGAAGAACAGAACCCTGGAGGCTCTTTGAAGAGGAAAGAGAGTGGTGGTGGAAAATCAACATTGGATGAATTGATGAGGGAGGAAGAGAAGAAAAAGGAGAAAATTAATAGGAAAGATTACTGGTTGTATGAGGGAATTGTTGTTAAGGTCATGAGCAAAGCTTTGGCCGATAAAGGGTATTACAAACAGAAAGGTTTTGTTTTAAAGGTGATGGACAAATATGTTGGTGAAATACAAATGCTTAAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAACTTGAAACTGTGATTCCCCAAATTGGGGGTCTAGTGAAGATCGTAAACGGAGCGTATCGTGGATCAGTAGCAAGATTGTTAGGGGTTGATTCGGATCACTTTAGTGCTAAGGTGCAGGTAGAGAAAGGTCCCTATGATGGTAGAGTACTTAAGCCAATGGAATACGATGATAGTGAGCTTCAATGGCAGAACGATGCTAGTAACTCAAGGCTTATAATACTTAATGATGATGCCATGTGA 1755 0.4353 MALRFLLTWQGCSCKAVMFNVIMCGSTSILRNILDPSGLVTVVCRRGLVDRCAPAGEADSKALAVSQDINQKGGDGAVGMCSADSMDFNLVDIKSRASPFDVTSHFHGNLALKAELRKLPFSATVVTWSCSLHSTFSSASLSLTFDMGLFCGLQAFFCLVTVWFFSIXLSMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCLSEGHQRQMQVFGQNPNRIVEGYSEEFEKTFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIRADMAEEEKQEKEIRKQIEKAEQLMQPSTTGSDQSLQAELPRELKLEDGVKIGFSLGSSAKPVTKEKHEGPKILFDEGEDARNEEQNPGGSLKRKESGGGKSTLDELMREEEKKKEKINRKDYWLYEGIVVKVMSKALADKGYYKQKGFVLKVMDKYVGEIQMLKSKHVLRVDQAELETVIPQIGGLVKIVNGAYRGSVARLLGVDSDHFSAKVQVEKGPYDGRVLKPMEYDDSELQWQNDASNSRLIILNDDAM 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2523 584 Gene3D - 230 329 IPR038254 -
Bisa05g2523 584 FunFam DNA/RNA-binding protein kin17-like 457 510 - -
Bisa05g2523 584 MobiDBLite consensus disorder prediction 331 369 - -
Bisa05g2523 584 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 171 562 IPR037321 -
Bisa05g2523 584 SMART Kin17_mid_2 222 348 IPR019447 -
Bisa05g2523 584 Pfam Domain of Kin17 curved DNA-binding protein 222 347 IPR019447 -
Bisa05g2523 584 Gene3D - 511 563 IPR014722 -
Bisa05g2523 584 MobiDBLite consensus disorder prediction 331 349 - -
Bisa05g2523 584 FunFam DNA/RNA-binding protein KIN17, putative 231 330 - -
Bisa05g2523 584 Coils Coil 430 450 - -
Bisa05g2523 584 FunFam DNA/RNA-binding protein KIN17, putative 511 563 - -
Bisa05g2523 584 Pfam KN17 SH3-like C-terminal domain 449 502 IPR041330 -
Bisa05g2523 584 SUPERFAMILY beta-beta-alpha zinc fingers 196 234 IPR036236 -
Bisa05g2523 584 MobiDBLite consensus disorder prediction 351 366 - -
Bisa05g2523 584 MobiDBLite consensus disorder prediction 390 439 - -
Bisa05g2523 584 Gene3D - 457 510 - -
Bisa05g2523 584 Coils Coil 324 353 - -
Bisa05g2523 584 MobiDBLite consensus disorder prediction 391 420 - -
Bisa05g2523 584 CDD KOW_KIN17 513 562 IPR041995 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2523 Bisa-ChrBisa05 60140827 60146396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2523 171 562 C2H2 Transcription Factor Family AT1G55460 70.270 0.0 572