Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2413 ATGCAAATAAGAAAACCTCAGCCCTACGAAATTTCTTTTCTACCTTCATCGATCCCAGGCTCTCGTTTCATTGGTGTCTTCGATCACAAAAATCTCCGATCTCCTCATTCCGGCAACTGCATATCCTCATCTGCACCACCATGGGTTCCAGGAAAGGTGACAATCTTCATTCCGGCGACGGTGCCAGTCCGGGGTTCTAAAATCTTTATTGGAGGATTGGCGAGAGATACAACCTTGGATGCCTTCGTCAAGTACTTTGAGAAGTATGGAGAGATAATTGATTCGGTGATAATGAAAGATCGGCACACAGGTCGACCCAGGGGTTTCGGGTTTATTACCTATGCTGATCCCTCTGTTGTTGACCAGGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTTGAGATCAAAAGGACTATCCCCAAGGGTTCAGCAAATGATAACAATTTCAAAACCAAGAAGATTTTTGTTGGTGGTATAACATCAACGGTAAATGAAGATGAATTAAAGAACTTTTTCTCGAAGTATGGGAAGGTTGTGGAGCATGAGATTATACGTGACCATACTACTAAACGTTCCCGCGGTTTTGGATTTGTTGTGTTTGACAATGAAAAGGTTGTTGAGAATATACTGGCAAATGGAAATATGATTGATATGGCGGGTACTCAGGTTGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCAGCACCTCATCCGCCATTTGGTAGTGACTCTAGGCCACGTCCATATGGTGATGTTTATAGTGGATTTGGTGATTCTTATAGCAGTTTTGGCGGTGGCAGCTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGTGGTGGAGAAGACTGTGGTGGTAGTTTTGGGGGTTATGGTGGTGGTAGTGGTTTTTCTGGCTACCGAGGAGACTCTTCATTTGGCTATTCTAGTCGCTATACTTCCTATATGGAGGGCCTTGGTGGTGGATATGGCGGTGGTAGTTTAGGTGCATATGGTCGAGGAAGTGGGGGCTATGATAGCTATGGTGGTCCAGTCTCTGGTGGGGATTATGATTCAGGCCCTAGTGCTGGTTATGGTGGGGCAGGAGGACTTTATGGTAGTAGGGGAAGTTATGGTAGCAGTAGTCGTTACCATCCTTATGCAAGATAG 1194 0.4523 MQIRKPQPYEISFLPSSIPGSRFIGVFDHKNLRSPHSGNCISSSAPPWVPGKVTIFIPATVPVRGSKIFIGGLARDTTLDAFVKYFEKYGEIIDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSANDNNFKTKKIFVGGITSTVNEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDNEKVVENILANGNMIDMAGTQVEIKKAEPKKASNPAPHPPFGSDSRPRPYGDVYSGFGDSYSSFGGGSFGPASYRSLGGFGGRLGDYGGYGGGEDCGGSFGGYGGGSGFSGYRGDSSFGYSSRYTSYMEGLGGGYGGGSLGAYGRGSGGYDSYGGPVSGGDYDSGPSAGYGGAGGLYGSRGSYGSSSRYHPYAR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2413 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 142 IPR000504 GO:0003723
Bisa05g2413 397 MobiDBLite consensus disorder prediction 229 252 - -
Bisa05g2413 397 SUPERFAMILY RNA-binding domain, RBD 148 261 IPR035979 GO:0003676
Bisa05g2413 397 FunFam Heterogeneous nuclear ribonucleoprotein 1 147 271 - -
Bisa05g2413 397 FunFam Heterogeneous nuclear ribonucleoprotein 1 65 146 - -
Bisa05g2413 397 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 66 397 - -
Bisa05g2413 397 SUPERFAMILY RNA-binding domain, RBD 57 145 IPR035979 GO:0003676
Bisa05g2413 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
Bisa05g2413 397 Gene3D - 145 259 IPR012677 -
Bisa05g2413 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Bisa05g2413 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 218 IPR000504 GO:0003723
Bisa05g2413 397 Gene3D - 65 144 IPR012677 -
Bisa05g2413 397 SMART rrm1_1 67 138 IPR000504 GO:0003723
Bisa05g2413 397 SMART rrm1_1 155 228 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2413 Bisa-ChrBisa05 56216949 56218991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2413 65 277 Eukaryotic Initiation Factors Gene Family AT3G16380 25.630 3.71e-15 75.1