Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2380 ATGGATGTTGTAAACGCTGAAGATGCAACTCAAGCAGCCAGAGTTAGACGACAAACACACATTCTCTTTCTCAAAGGAAAGTTTTTAGAAGACTTTAGCTGTTACATCTGTGGGGAGATTCTGGATCTCCCTCTGACGACACCATGCGGTCACAGCTTCTGTAAAGCTTGTCTTTTGGAAACCTTTTCTAGCCAAAGTATCCTCAGAAAGACAACATTCCAATTAAGACGACGTTGTTTACCTTCACAAATCGACATCATTTTGGAGTGCCCTTCTTGTTTAAATGACATTGCTGACTATCTCCTTAACCCACAGGTTAACATAGAAATGATGAATGAGATAGAATCAGTGAAGGAACTAATAAAAGTAATGGAGGAGCAGGATGAGAAAGATTGGGAGGAGGAATCAAGCAACAAGAGGAGAAACGAGGAAGAGCCTGTCATCTGCGTGTTGAACAGACAGCAAACCATAGACGAGTTCTTACAAGAGAGTGATGATGTCGATGCTTGA 510 0.4157 MDVVNAEDATQAARVRRQTHILFLKGKFLEDFSCYICGEILDLPLTTPCGHSFCKACLLETFSSQSILRKTTFQLRRRCLPSQIDIILECPSCLNDIADYLLNPQVNIEMMNEIESVKELIKVMEEQDEKDWEEESSNKRRNEEEPVICVLNRQQTIDEFLQESDDVDA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2380 169 Coils Coil 107 127 - -
Bisa05g2380 169 ProSiteProfiles Zinc finger RING-type profile. 34 93 IPR001841 -
Bisa05g2380 169 SMART ring_2 34 93 IPR001841 -
Bisa05g2380 169 SUPERFAMILY RING/U-box 27 97 - -
Bisa05g2380 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 153 IPR013083 -
Bisa05g2380 169 Pfam RING-type zinc-finger 34 64 IPR027370 -
Bisa05g2380 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 10 138 IPR045134 -
Bisa05g2380 169 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2380 Bisa-ChrBisa05 55520099 55523080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2380 24 128 C2H2 Transcription Factor Family AT5G39550 45.714 3.14e-22 90.5