Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2379 ATGGCCCAACTTTCCAAGGCTTACGTCTGCGTCGTCGTCGGCGAAGGCAACGGCGTTTGCATGAGTTGCAAGAAGCGGCCGCCGTCCGACGACGTCGTCTCATGCAATACTTGTGCCACTCGCTGGCACCTTCCCTGCCTCGCCGCCCCCAAAACGACGTCGGATGACCTTCTCTTGGACCACTGCCCCCATTGCTGTTCGCTCTGCATGCAATTACTGGACACACCTGTCACGACGCCATGTGGTCACAGCTTCTGCTTGAAGTGCTTCAAGAAGTGGATTTCAGAAGGGAAGCAAAGCTGTGCTTATTGTGGGAACGAGATCCCTAATAAGATGGCAAGGCAGCCCCGAATAAACACAGAACTTGTTTCAGCCATAAGATTCTCTAAAGCTTCAAAGTCATCAGATAGTGGTGCGATAATGTTAACAACAGAGACCAGAGATAATACGAAAGGTGCAAAGTCTGGTGCTTGTGGTGGTGAGGATCATTTTGGGCCAATTAAAGGTGTGATGGTGGGAGAGACGTGGGAGAATAGGATGGGGTGTAGGCGATGGGGGGTTCATGCTCCTATTGTGGGTGCTGTTGCAGGGAAGAGTGGTTATGGTGCTCAGTCTGTGGTGCTTGTTGGAAGATATGAAGATGATGAGGACCATGGTGACTGGTTTCTCTACACTGGCAGTGATGAAAGAGACCCTGGTGGCGACAAATACTGTGCGAGCGACGAAAAACCCTTTGATCAGAAGTTCCAAGAGTTGAACGAGGCTTTGAGGGTGAGTTGCCTGGAAGGTTATCCTGTTCGAGTAGTAAGTGCTGCTGGTATTCGATATCCTCTTGGTGACAGTGCTAGGGAGTGGACTATGCATGGTGGTGAAGAGGAGGAGGGGCGTCTTACAAGGAGAGAGGCTCTTGCTATGCACCAGAAACAGGGTTACGTTATGATGGAATTTATAGAATAG 957 0.5047 MAQLSKAYVCVVVGEGNGVCMSCKKRPPSDDVVSCNTCATRWHLPCLAAPKTTSDDLLLDHCPHCCSLCMQLLDTPVTTPCGHSFCLKCFKKWISEGKQSCAYCGNEIPNKMARQPRINTELVSAIRFSKASKSSDSGAIMLTTETRDNTKGAKSGACGGEDHFGPIKGVMVGETWENRMGCRRWGVHAPIVGAVAGKSGYGAQSVVLVGRYEDDEDHGDWFLYTGSDERDPGGDKYCASDEKPFDQKFQELNEALRVSCLEGYPVRVVSAAGIRYPLGDSAREWTMHGGEEEEGRLTRREALAMHQKQGYVMMEFIE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2379 318 SMART G9a_1 160 303 IPR003105 -
Bisa05g2379 318 Pfam SAD/SRA domain 163 272 IPR003105 -
Bisa05g2379 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 151 IPR013083 -
Bisa05g2379 318 Gene3D - 160 283 IPR036987 -
Bisa05g2379 318 SMART ring_2 66 104 IPR001841 -
Bisa05g2379 318 ProSiteProfiles YDG domain profile. 165 318 IPR003105 -
Bisa05g2379 318 Pfam Zinc finger, C3HC4 type (RING finger) 66 104 IPR018957 GO:0046872
Bisa05g2379 318 SUPERFAMILY RING/U-box 65 126 - -
Bisa05g2379 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 64 269 IPR045134 -
Bisa05g2379 318 ProSiteProfiles Zinc finger RING-type profile. 66 104 IPR001841 -
Bisa05g2379 318 SUPERFAMILY PUA domain-like 161 270 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2379 Bisa-ChrBisa05 55504789 55511837 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2379 15 65 C2H2 Transcription Factor Family AT5G39550 43.137 3.32e-08 52.8