Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2363 ATGAACCTGCCCTCTGTTCTGTTTGAACTTAATAGATTAATTTTATTTGTAGGTAAAATGCAATCCGATAATGGCAAGTTATTTATCGGTGGAATATCGTGGGACACAAATGAAGAGCGCCTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTCGTCGTTTTTGCCGAACCAGCTGTTGCAGATAGAGTCATAAAAGAGAAGCACAATATCGACGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTCGAGATGACCAGAACATGCTTACTAGAAACAGTGGTAGTTTCCATGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCAACAGTTACAGAGAGTGATTTCAAGAAGTATTTTGATCAATTTGGGACAATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGGTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAACTGTCACCAGGACCGAACCGCAGCCCACTTAGTGGATATAACTATGGTCTGAGTAGGGTCAGCAGTAGTTTCCTTAATGGCTTCACCCAGGGGTATACTCCGAGTGCTGTTGGAGGCTATGGACTTAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAATATGAACTATGACCCTGGCTTGAGCCCTGGATTTCAGGGGAATGCAAATTTCAATAGCAATCTGAGCTATGGTCAGGGGTTGAATCCTTATTACATTGGCAGCTCAAATAGGTTCGGAAGTCCAATGGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTTACTCGGAATTTGTGGGGGAATGGTGGTCTTAATTATGGAACAAGCTCTACAAATTCCAATGCATACATGGGATCGGGAAGTGGGAATGTTGGAGGAAACTCATATGGGACTGGAGTGAATTGGGGTTCTTCAGCAGTTTCTGGTCAAGGTGGAATGAACAATGTGTCGCAGAGTAGTAGCAACCTTGGCTATGGAGGTGGTGACAACAATAATTTGAGAGCTGGAGGGTATGGAAGGAGCAGTGGTACCAGTATTGCCCCAACATCGTCATACTCTGCATCAAATGGTGTGTTTGATGAGGCTTTCACTGACTTTTACAATAGTAGTTCAGTTTATGGGGATCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGGTCTGTTCTCTTTGGTTATGGACTTGGTACTGCAGCTTCAGATGTTTCAACGAAAAGTCCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1491 0.4366 MNLPSVLFELNRLILFVGKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFAEPAVADRVIKEKHNIDGRMVEAKKAVPRDDQNMLTRNSGSFHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLSGYNYGLSRVSSSFLNGFTQGYTPSAVGGYGLRVDGRFSPVASGRSGFAPFGSGYGMNMNYDPGLSPGFQGNANFNSNLSYGQGLNPYYIGSSNRFGSPMGYDGGNGGNNSFFSSVTRNLWGNGGLNYGTSSTNSNAYMGSGSGNVGGNSYGTGVNWGSSAVSGQGGMNNVSQSSSNLGYGGGDNNNLRAGGYGRSSGTSIAPTSSYSASNGVFDEAFTDFYNSSSVYGDPTWRSSNSERDGSVLFGYGLGTAASDVSTKSPPGYVGGYTVNKRQPNRGIAT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2363 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 101 IPR000504 GO:0003723
Bisa05g2363 496 SMART rrm1_1 126 198 IPR000504 GO:0003723
Bisa05g2363 496 SMART rrm1_1 26 97 IPR000504 GO:0003723
Bisa05g2363 496 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 209 - -
Bisa05g2363 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 184 IPR000504 GO:0003723
Bisa05g2363 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 88 IPR000504 GO:0003723
Bisa05g2363 496 Gene3D - 122 208 IPR012677 -
Bisa05g2363 496 SUPERFAMILY RNA-binding domain, RBD 20 124 IPR035979 GO:0003676
Bisa05g2363 496 SUPERFAMILY RNA-binding domain, RBD 124 212 IPR035979 GO:0003676
Bisa05g2363 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Bisa05g2363 496 Gene3D - 23 107 IPR012677 -
Bisa05g2363 496 FunFam Heterogeneous nuclear ribonucleoprotein 1 24 106 - -
Bisa05g2363 496 CDD RRM1_hnRNPA_hnRNPD_like 27 97 - -
Bisa05g2363 496 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 20 492 - -
Bisa05g2363 496 MobiDBLite consensus disorder prediction 473 496 - -
Bisa05g2363 496 CDD RRM2_Hrp1p 126 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2363 Bisa-ChrBisa05 55054565 55066310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2363 27 204 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 9.56e-15 75.1