Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2362 ATGAAGTATTTTTTGTATGTAGAGAAAATGCAATCCGATAATGGTAAGTTATTCATTGGTGGAATATCATGGGACACAAATGAAGAGCGGCTCAGGGAGTATTTCAGTACTTATGGGGAAGTTGTGGAAGCAGTGATTATGAAGGATCGAACAACAGGTAGAGCCCGTGGATTTGGTTTTGTTGTCTTTGCCGATCCAGCTGTTGCAGATAAAGTCATAAAAGAGAAGCACAATATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCAAAACATACTGAGTAGAAACAGTGGTAGCAACCATGCTTCTCCTGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCAACAGTTACAGAGAGTGATTTCAAGAAATATTTTGATCAATTTGGGACAATAACGGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGGGGCTTTGGATTTATCACCTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACTTTCCATGAACTGAATGGTAAAATGGTTGAAGTCAAGAGGGCAGTTCCTAAGGAACTATCACCAGGACCAAACCGCAGTCCACTAAGTGGATATAACTATGGTATGAGTAGGGTCAATAGTTTCCTAAATGGCTTCAACCAGGGGTATACTCCTGGTACTGTTGGAGGCTTTGGACTCAGGGTGGATGGCAGATTCAGTCCTGTTGCAAGTAATCGTAGTGGATTTTCTCCAGTTGGATCTGGCTATGGAATGAATATGAATTTTGAGCCTGGTTTGAGTCCTGGATTTGGGGGAAATGCAAATTTTAATAACAATCTTAGCTATGCTCGGGGGTTAAATCCTTATTATATTAGCTCAAACAGGTTTGGCAATCCTATGGGCTATGATGGTGGTAACGGAGGAAACAATTCTTTCTTTAGCTCTGTGACTCGGAATTTGTGGGGAAATGGCAGCCTTAGTTATGGAACAAGCTCTGCAAATTCCAGTGCATACATGGGCTCAGGAAGTGCAAATGTTGGAGGAAATACATATGGCAATACTGGAGTTAATTGGGGTTCTACAGCAATTTCTGGTCAAGGTGGAAATGTGTCACAAAGTAGTAGCAACCTGGGATATGGAGGTGGTGACAGCAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAACAGTGCTACCAGTATTGCTCCAACATCATCATACTCTGCATCAAATGTTGGTTTTGATGGGGCCTTTGCTGATTTTTACAGTAGTAGTTCAGTTTATGGGGATCCCACTTGGCAATCTTCAAATTCTGAGAGAGATGGGTCTGTTCCCTTTGGTTACGAGCTTGGTAGTGCAGCTTCAGATGTTTCTGCCAAAACCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1455 0.4206 MKYFLYVEKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVADKVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSNHASPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLSGYNYGMSRVNSFLNGFNQGYTPGTVGGFGLRVDGRFSPVASNRSGFSPVGSGYGMNMNFEPGLSPGFGGNANFNNNLSYARGLNPYYISSNRFGNPMGYDGGNGGNNSFFSSVTRNLWGNGSLSYGTSSANSSAYMGSGSANVGGNTYGNTGVNWGSTAISGQGGNVSQSSSNLGYGGGDSSYGLGTGGYGRNSATSIAPTSSYSASNVGFDGAFADFYSSSSVYGDPTWQSSNSERDGSVPFGYELGSAASDVSAKTSPGYVGGYTVNKRQPNRGIAT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2362 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Bisa05g2362 484 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 480 - -
Bisa05g2362 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Bisa05g2362 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Bisa05g2362 484 Gene3D - 112 198 IPR012677 -
Bisa05g2362 484 CDD RRM2_Hrp1p 116 193 - -
Bisa05g2362 484 SMART rrm1_1 116 188 IPR000504 GO:0003723
Bisa05g2362 484 SMART rrm1_1 16 87 IPR000504 GO:0003723
Bisa05g2362 484 SUPERFAMILY RNA-binding domain, RBD 110 213 IPR035979 GO:0003676
Bisa05g2362 484 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Bisa05g2362 484 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Bisa05g2362 484 MobiDBLite consensus disorder prediction 459 484 - -
Bisa05g2362 484 SUPERFAMILY RNA-binding domain, RBD 8 112 IPR035979 GO:0003676
Bisa05g2362 484 Gene3D - 13 97 IPR012677 -
Bisa05g2362 484 MobiDBLite consensus disorder prediction 95 109 - -
Bisa05g2362 484 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Bisa05g2362 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Bisa05g2362 484 MobiDBLite consensus disorder prediction 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2362 Bisa-ChrBisa05 54990968 54998178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2362 17 290 Eukaryotic Initiation Factors Gene Family AT1G71770 27.070 1.06e-14 74.7