Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2358 ATGGATTCTTATGAAGCCACGAATGTAGTGCTGACCAAAATAAAAAACCTCGACCCAGAAAATGCGTCAAAAATCATGGGGTTTCTTCTCATTAGCCTGGAAGAGAGTGAGTTAGTGCGGTTGTCTTGTAGCCCGGACCATGTTCTGCACGCTCTAATTCTCAGGGCGAAGGCTCACTTGGGTCTTTCCTCAAACAGCTCGTCGACAACCCCTTCTACTCCTTCCTCTCCTTCTCCTCTCAACCCTATAGCGAGACCCACCAGTAGCAACCCATTTTCGCAGTCGTCGCCAAGAATCGGTGACAATGGATTTAACTTCAGTAGGAACCCATCTTCGCCATCTTCGCATTCGTGGACACTTTCTGGGTTCCCGAAGAACCCCATTAGCCCAAACTCAGGTTCTTTGCTTTCTTTCAAGAATATCCGTGCTGGATTCCCAAACAGCCCCACCGGTACTGTTAACGACTTCGTAGATGAAAATCCAATGACCGATTACTTTTCCTTCCTCAACGAGTCCTCCAAGAACGAGGATTTGGCCGATCCACGGCTTGAATTGGGAGTACTTGGGGTTAACAATTGGCACTCTGTCAACAATGGCGATGTTCCTCCCTTCCATAGGAGAAGCTTCTCGGCTAGCGATGTGTGTTTTGAGTCTGAAGAAGCAGGTTCGGGAATTGGGTACAAGCCCTGCCTTTACTTTGCGAGGGGGAACTGTAAAAACGGCAGCAATTGCAAGTTTGTGCATGGCGTTTTAACTGATTCACTGGATGCTCCCATCATTGGTTCTCCAAGTAAGTTCGAGGGGTTCGAACAGCGTGAGGAGATTATGAGGTTGAAGGCCACGCAGCAAAGAATGATGGCTTCATCGCGCCTTATGACTGGAGTGTCACCATCCTCGCACGATCAGTATATAAATTATTTGATGCAGCAACCAAATGATCCCCAGAGCCAGAGCAAATTTGGACCTGTGCAAGATGTGAGAATTCCGTACCAGCAAAAGCGAATGTTTGGATTTGTTACTTTTGTCTATCCAGAGACAGTGAGACTCATATTATCCAAAGGGAATCCTCATTTTATCTGTGATTCGCGGGTGCTTGTCAAGCCCTACAAGGAGAAAGGAAAAGCCACCGAAAAGCGACAACAGCATCAACAGCAGCAGTTTGACAGGGGGGATTTTTCACCATCTTTGAGTCCTTCAGGATTTGATTCCAAAGAACCTTATGACCTTCATCTTGGAGCAAGAATGTTCTATAATCCACAGGAGATATTTTTGAGAAGAAAATTGGAGGAACAGGCCGAGTTGCAGAAAGCCATCGAACTTCAAGAAAGAAGGCTGATGAATCTGCAGCTTCCAGACTTCAAGAATAATGCCATGCACCATCACCAACGCAGTCTCTCTGTTGGTTCTCCTCTGCCTTTACAGCAACAAGTTCATAGTCATAATAGCAATCCAGTTCTTTCTTCTGATAATATTGCAGGCTATAGTGGCAGCCAGGCTCCTACTATTTCTTTACCTATCGCTACTGCTCCTGCTGAGAAACATCAGCCGCTGCAGGAAGATAATGCTGGTGGAAACAAAAAGGATGGCACAAATACAGAAGTCTTTGATAATAATGTGGAGCAAGTCCTTCCTGATAGCCTATCTGCTTCACCAACAAAAGCCGCAGAAGATCTATCCGACTTATCTGCATTGTCTGAGGTCAGTGACAGTGCTGCATTCTTGACTAGCTGCACTGCAGATAACAATGTAGAACCTCCCACCACATCTAGTGGCGTCTCGTCTCGTTAA 1788 0.4614 MDSYEATNVVLTKIKNLDPENASKIMGFLLISLEESELVRLSCSPDHVLHALILRAKAHLGLSSNSSSTTPSTPSSPSPLNPIARPTSSNPFSQSSPRIGDNGFNFSRNPSSPSSHSWTLSGFPKNPISPNSGSLLSFKNIRAGFPNSPTGTVNDFVDENPMTDYFSFLNESSKNEDLADPRLELGVLGVNNWHSVNNGDVPPFHRRSFSASDVCFESEEAGSGIGYKPCLYFARGNCKNGSNCKFVHGVLTDSLDAPIIGSPSKFEGFEQREEIMRLKATQQRMMASSRLMTGVSPSSHDQYINYLMQQPNDPQSQSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKATEKRQQHQQQQFDRGDFSPSLSPSGFDSKEPYDLHLGARMFYNPQEIFLRRKLEEQAELQKAIELQERRLMNLQLPDFKNNAMHHHQRSLSVGSPLPLQQQVHSHNSNPVLSSDNIAGYSGSQAPTISLPIATAPAEKHQPLQEDNAGGNKKDGTNTEVFDNNVEQVLPDSLSASPTKAAEDLSDLSALSEVSDSAAFLTSCTADNNVEPPTTSSGVSSR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2358 595 SUPERFAMILY RNA-binding domain, RBD 318 395 IPR035979 GO:0003676
Bisa05g2358 595 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 318 554 - -
Bisa05g2358 595 MobiDBLite consensus disorder prediction 371 385 - -
Bisa05g2358 595 SUPERFAMILY CCCH zinc finger 227 249 IPR036855 GO:0046872
Bisa05g2358 595 MobiDBLite consensus disorder prediction 371 404 - -
Bisa05g2358 595 MobiDBLite consensus disorder prediction 63 119 - -
Bisa05g2358 595 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 312 374 - -
Bisa05g2358 595 Gene3D - 217 298 - -
Bisa05g2358 595 SMART c3hfinal6 226 250 IPR000571 GO:0046872
Bisa05g2358 595 Gene3D - 315 393 IPR012677 -
Bisa05g2358 595 MobiDBLite consensus disorder prediction 82 119 - -
Bisa05g2358 595 MobiDBLite consensus disorder prediction 513 532 - -
Bisa05g2358 595 MobiDBLite consensus disorder prediction 386 400 - -
Bisa05g2358 595 ProSiteProfiles Zinc finger C3H1-type profile. 229 251 IPR000571 GO:0046872
Bisa05g2358 595 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 249 IPR000571 GO:0046872
Bisa05g2358 595 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2358 Bisa-ChrBisa05 54848324 54852923 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa05g2358 zf-CCCH 2.2e-06 CL0537