Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2356 ATGTTGAAAGTCAAATATTCTTTTTCTCGAGAGTCGAGAGTTTCAAAGATGCAGGCAACAGCAGCTGATGCGGAGGCCGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGATGACGGCGTAGCCGACGGTTCCGCCTCTCCTCGTGCCCTACCTCTGCCTAAGCTCAAATCTGCCATCACAGGCGGCGGCGGCGCTTCTTCTTCACTATCAGCCCCTAAGAAGACCAAAGGCCGCGGTTTTCGTCAGACTTCCGATGCCGACCGTAAAGCTCGCCTTGCTACCTCCGAATTCGACTCTCTTACAACCGAGGGTGGCCCCGGTCCTCAACGATCTATTGAAGGATGGATTATTCTGGTCACTGGGGTGCATGAGGAAGCGCAAGAGGATGATCTGCAAAATGCATTTGGTGAATATGGAGAGATTAAGAATCTGCATTTGAATCTTGATCGTCGCACTGGTTTTGTTAAGGGTTATGCTCTGGTTGAATATGAGCATGCTGAGGAAGCCCGGAATGCAATAGAGAATTTGAATGGATCTGAACTACTTACACAAACTATTTATGTTGACTGGGCCTTCTGTAGGGGACCTATTAATGCGTCATTCAGAAGAAAGAATGCTAGACCACAGCGGGAACGACGCTCAAGGAGCCCTAGGAGGAGGTTTTGA 672 0.4985 MLKVKYSFSRESRVSKMQATAADAEAVDFEPEDDDLMDDDGVADGSASPRALPLPKLKSAITGGGGASSSLSAPKKTKGRGFRQTSDADRKARLATSEFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALVEYEHAEEARNAIENLNGSELLTQTIYVDWAFCRGPINASFRRKNARPQRERRSRSPRRRF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2356 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Bisa05g2356 223 FunFam RNA-binding protein 8A-like 46 214 - -
Bisa05g2356 223 Gene3D - 65 208 IPR012677 -
Bisa05g2356 223 CDD RRM_RBM8 111 198 IPR033744 GO:0003729
Bisa05g2356 223 MobiDBLite consensus disorder prediction 26 41 - -
Bisa05g2356 223 MobiDBLite consensus disorder prediction 80 96 - -
Bisa05g2356 223 SUPERFAMILY RNA-binding domain, RBD 110 221 IPR035979 GO:0003676
Bisa05g2356 223 SMART rrm1_1 118 191 IPR000504 GO:0003723
Bisa05g2356 223 MobiDBLite consensus disorder prediction 1 108 - -
Bisa05g2356 223 PRINTS RNA binding motif protein 8 family signature 108 122 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bisa05g2356 223 PRINTS RNA binding motif protein 8 family signature 71 83 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bisa05g2356 223 PRINTS RNA binding motif protein 8 family signature 164 180 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bisa05g2356 223 PRINTS RNA binding motif protein 8 family signature 182 194 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bisa05g2356 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Bisa05g2356 223 PANTHER RNA-BINDING PROTEIN 8A 23 222 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2356 Bisa-ChrBisa05 54771367 54779456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2356 119 196 Eukaryotic Initiation Factors Gene Family AT3G11400 30.769 8.63e-09 52.8