Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2260 ATGAATCCCTTAACCCTAGTGAAGCGGATTCAGAATATCAATTCTAAAGAAGCCGCTCTAGGCATCGGCGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCGGCTTATGTATTTGTGGGTGGCATTCCCTTTGATTTGACAGAGGGGGATCTCCTCGCAGTTTTCGCTCAATATGGGGAAGTTGTTGATGTTAATCTTGTTAGAGATAAAGGTACTGGGAAATCAAAAGGTTTTGCATTTCTTGCGTATGAAGATCAGAGAAGCACAACTCTTGCTGTAGATAATTTGAATGGAGCACAGATTTTAGGTAGAATCATTAGGGTTGATCATGTTACTAAGTATAAAAAGAAGGAAGAGGAAGATGAAGAGACAGAGCGACAGAAACGGGAGGAACGTGGTGTTTGTCGTGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCACGATGAGCAAAGAGCTGCAAACACAGGTTGGGGGGCCCCTGGGGATGATACATCAAAATGGGGTCATGACAAATTTGAGGGTCACAAAAAAGAGAAAAGATCTGGAATCAATCAATCAAATCATATTCCTGATGCTAGAGATAGAGATTCACGCTTCAGAAACCAGGGCAATGAGATGGGATTAGGCAGCCAATCCAAGCTAAGTGATAGGAGAGAAGAGAAGGTATCACAGAGACACGATGATGAGAAATTTGAGGGAAGAGAAAATAATCACAGAAGAGAGAAGAGATCGAGAACACATGAAGATGATGAGTATGCATCTAGGTCAAGAGAAGATCGTGATAGAAGGGAAGATAAGAGATCAAGAAGGCGTGAGGACCATGATATGGAACCTGAGCTGAGAGATCATCGTATGAGGGAAGACATGAAGTCAAGAAAGCCAGATGATGTTGAATTTGAACCCAAGTCTAGAGATTCTGATAGAAGGGAAGAAAAGAGGTACAGGAGGCAGGATGATGATGATTCTGGTAGTAGGTTAAGGGAAGATCATGCTAAAAGGGAAGAAAGAAGATCAAGGCAGCACAGAGAACATGACTCTGCACTAAGGTCAAGAGAAGATTATGATAGGAAACTAGAGAATAGATCGTATAGAAATGATACTGATAGATCAGAGCCTAAAGAAAGATATGATATGGACAGGAGAGAAGAGAAGAGATCAAGAAGGTAA 1188 0.4175 MNPLTLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTTLAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETERQKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPGDDTSKWGHDKFEGHKKEKRSGINQSNHIPDARDRDSRFRNQGNEMGLGSQSKLSDRREEKVSQRHDDEKFEGRENNHRREKRSRTHEDDEYASRSREDRDRREDKRSRRREDHDMEPELRDHRMREDMKSRKPDDVEFEPKSRDSDRREEKRYRRQDDDDSGSRLREDHAKREERRSRQHREHDSALRSREDYDRKLENRSYRNDTDRSEPKERYDMDRREEKRSRR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2260 395 Gene3D - 9 127 IPR012677 -
Bisa05g2260 395 FunFam Uncharacterized protein 127 205 - -
Bisa05g2260 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Bisa05g2260 395 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Bisa05g2260 395 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Bisa05g2260 395 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Bisa05g2260 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bisa05g2260 395 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bisa05g2260 395 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Bisa05g2260 395 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Bisa05g2260 395 MobiDBLite consensus disorder prediction 154 395 - -
Bisa05g2260 395 MobiDBLite consensus disorder prediction 171 208 - -
Bisa05g2260 395 Gene3D - 128 211 - -
Bisa05g2260 395 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 270 - -
Bisa05g2260 395 MobiDBLite consensus disorder prediction 219 395 - -
Bisa05g2260 395 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Bisa05g2260 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2260 Bisa-ChrBisa05 51640647 51644361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2260 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 31.081 9.08e-06 45.8