LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g2246	ATGGAACCCAGATTTGCGTTTCATGTTTACTTCTTCTTCTTCTTCTTCTTCTTGGCTTCGATTTTTCTCAGTGCCGAATCACAATGTAGCGAGGTTTGTGGCAGAGCTCTTGCTTCGTACTACGTTTGGCGAGGTTCCAACCTTACTTATATCTGGCAGCTTATGAAATCCCCGCTTCTATCAACCAACGATATACTCAGCTACAATAAGGATACAGTACCGAACGAGGATAGCATGCGAGCGGATATAAGAATCAACGTTCCGATTCCATGTGGTTGCATTAACGATGAATTTCTAGGTTATACTTTTCAGTACAATGTTAACTCAGGGGACACCTATGAGATTGTTGCTACGAAAAACTATGCCAATTTGACCACCGTTGAGTGGTTGCAGAAGTTCAATAGCTACCAACCAAACAATATTCCTGACAATGGAACCTTAAATGTCACGGTTAATTGTTCATGTGGGAACAGTGATGTCTCTAAACATTATGGGTTGTTCATCACATACCCGCTGAGGCCTGGGCAGACTTTGCAGTCTGTGGCAAACGAGGTGGGTCTTGATACGGGGTTGCTGCAGGGGTACAATCCCACTGTGAATTTTAACCAAGGAAGTGGTCTGGTTTATATTCCAGGCAAAGATCAAAATGGTAGCTATGTGCCACTTTCATCTGGAAGTGCAGGAGGTTTGACTTTGGCTCTACTCAGAAAACTGAATATGATAAAAATAAAAGGTCTAGGTGCAGGGCCTATTGCTGGAATATCCATTGGAGTAGTAGCAGTGCTTTTGTTATTAGCAGTGGGTATTTATGCTGGATATTTCCAAAAGAGGAAGATAGAGGAGCTGAAATTACTCTCACAAGAATCCAAAGGTCCCTTTACTCAAGATAGAATGGATGCAACCACTGGTAACGCTGAATATGGAACTTTGGGTTCTGCTGGCCTTGTTGCTGGCATTACTGGCATTGTGGACAAATCAGTGGAGTTTTCATATAAAGAACTAGCCACTGCCTCAAATAACTTTAGTATGTCTAACAAAATTGGTCAAGGTGGTTTTGGTGCTGTCTACTATGCAGAGCTGAGAGGCGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAGAGAATTTCTAGCTGAATTGAAAGTCCTAACTCATGTTCATCACCTTAATTTGGTGCGTTTGATAGGCTATTGTGTTGAGGGTTCTCTTTTCCTTGTCTATGAGTACATTGAGAATGGAAACTTAAGTCAACATCTTCGCGGTTCAGGAAGAGATCCACTGCCATGGTCTTCCAGGGTGCAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATATATTCACGAGCATACAGTGCCTGTATATATCCACCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCACGGAAAGGTTGCAGATTTTGGACTGACCAAACTGACTGAAGTTGGCAACTCATCACTCCCCACTGGTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCGAAAAGTAGATGTCTATGCTTTTGGAGTAGTCCTGTATGAGCTTATTTCTGCTAAGGAAGCTATCGTCAAGATAAATGAATCTGTTACAGACTCGAAGGGCCTCATAGATTTGTTTGAAGGAGTTCTTAATCAGCCCTATCCTACTGAAGATCTTCGCAAACTGGTGGACCGGAGGCTCGGTGATGACTACCCTATTGATTCAGTTCGCAAGATGGCCCAGCTAGCCAAAGCATGCACACAGGACAATCCCCAACTACGTCCAACTATGAGATCTATTGTTGTCGCTCTTATGACACTTTCATCTACCACTGAGGATTGGGATGTTGGCTCCTTTTATGACAATCAGCCTCTTGTGAATCTCATGTCTGGAAGATAG	1923	0.4264	MEPRFAFHVYFFFFFFFLASIFLSAESQCSEVCGRALASYYVWRGSNLTYIWQLMKSPLLSTNDILSYNKDTVPNEDSMRADIRINVPIPCGCINDEFLGYTFQYNVNSGDTYEIVATKNYANLTTVEWLQKFNSYQPNNIPDNGTLNVTVNCSCGNSDVSKHYGLFITYPLRPGQTLQSVANEVGLDTGLLQGYNPTVNFNQGSGLVYIPGKDQNGSYVPLSSGSAGGLTLALLRKLNMIKIKGLGAGPIAGISIGVVAVLLLLAVGIYAGYFQKRKIEELKLLSQESKGPFTQDRMDATTGNAEYGTLGSAGLVAGITGIVDKSVEFSYKELATASNNFSMSNKIGQGGFGAVYYAELRGEKAAIKKMDMQASREFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTGRLVGTFGYMPPEYAQYGDVSRKVDVYAFGVVLYELISAKEAIVKINESVTDSKGLIDLFEGVLNQPYPTEDLRKLVDRRLGDDYPIDSVRKMAQLAKACTQDNPQLRPTMRSIVVALMTLSSTTEDWDVGSFYDNQPLVNLMSGR	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g2246	640	Gene3D	Transferase(Phosphotransferase) domain 1	412	624	-	-
	Bisa05g2246	640	FunFam	LysM receptor kinase 2	320	411	-	-
	Bisa05g2246	640	SMART	serkin_6	341	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g2246	640	Pfam	Protein tyrosine and serine/threonine kinase	342	611	IPR001245	GO:0004672\|GO:0006468
	Bisa05g2246	640	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Bisa05g2246	640	Gene3D	Phosphorylase Kinase; domain 1	322	411	-	-
	Bisa05g2246	640	ProSiteProfiles	Protein kinase domain profile.	341	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g2246	640	SUPERFAMILY	Protein kinase-like (PK-like)	325	612	IPR011009	-
	Bisa05g2246	640	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	12	626	IPR044812	GO:0019199\|GO:0045087
	Bisa05g2246	640	FunFam	PTI1-like tyrosine-protein kinase 3	412	626	-	-
	Bisa05g2246	640	CDD	STKc_IRAK	347	609	-	-
	Bisa05g2246	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g2246	Bisa-ChrBisa05	51200458	51208571	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g2246	16	640	Receptor kinase-like Gene Family	AT3G21630	58.003	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Bisa05g2246		PK_Tyr_Ser-Thr	1e-47	CL0016