Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2193 ATGGCCAAGAAGCGAAAACTCCGATCATCTGAACCCGAATCTGCCCAGGTAGTCGATTCGCAACCTGCACAGCAAGAACAAACCCAAGAGCAGCAAATCCACGAGGACGTGAGAGAGGACGGACAACCCAACCCCGAAGCAACCCAAGAAGAAGAGCACCAGGGACACGAAACTATGGCCGTGGATGATGATACGCAACGAGGGGATGTAAAACTAGAAGAAAACGCCGATGTAGGAGAACATCAAGTAGACGACCCTGAAGAGCAGGAGGGCGTGCACCCCGAAACGGCAGAAGCTTCGACCGATGCTGTCCCATCTGAATCAGCTCAGGCTGATGCGAATGGAACTGAAGAAGGTGATGAGAATGATGACGATGGTGATAGTTTGGACGAAGAAGAGTCTGTAGAGAAGCTTCTTGAGCCATTTACGAAGGAGCAGCTGTATTCCCTTGTCAAGCAAGCTGTGGAGAAGTACCCGAATTTTATGGAGAACATTCGCCAGCTGGCGGACGTGGACCCTGCCCACCGAAAAATTTTCGTCCATGGTCTTGGCTGGGACACCACTGCTGAAACCCTTGCTAGTGTGTTTGGGAAGTATGGTGAGATTGAGGATTGCAAAGCCGTCACTGACAAGGTTTCTGGCAAATCCAAAGGCTATGCTTTCATCTTGTTCAAGCACCGAACTGGGGCTCGTAAGGCGCTGAAGGAGCCCCAGAAGAAAATTGGAAATCGAACTACATCGTGTCAATTGGCCTCCGCTGGCCCTGTCCCCTCGCCCGCAAGTGCGGCTCCACCGGTGTCTGAATATACTCAAAGGAAAATCTTTGTTAGCAATGTGAGTGCAGAGCTTGATCCCCAAAAGTTGCTTGAGTTCTTTGAGCAGTTTGGGGACATAGAGGATGGTCCTTTGGGTCTTGATAAGCAGACGGGGAAGCCTAAGGGATTTGCACTGTTTGTATACAAGTCCGCAGAGGGTGCTAAAAAGGCTTTAGAAGAGCCGCACAAGAACTTTGAGGGGCATACATTGTACTGTCAGAAGGCCGTTGATGGTCCTAAAGGAAACAGGGGATATCATCAGCACCAGCACCAGCACCAGTACCAGTACCATTCTCATCATCAGCCTCACTACCAGTCAAGAAAGGAGAAGAATAAGTATCAGTCTGGTGGGGCTGGAGCAGGACCCGGTCACCTAATGGCACCATCAGTCCCTGCTGTGGGTTTCAATTCTGGAGTGGCTGCTGCACAAGGATTAAATCCGGCACTTGGGCAGGCATTGTCTGCTTTGCTTACAACCCAAGGAGCTGGGTTAGGGCTGGGTAACCTGCTCGGAGGTCTTGGTGGTGCACCTGCAAACCAGGCTGGGCCACCTACTGGATATGTCAATCAGGGTGCTGTGGGCTACGGGAATCAGCCAGGAATGCAAGTGGGATACCAGAATCCACAGATGGGGCAGAGTGGTGGTGTTAGGCCTCATCCAGGATCTGGCGCTCCGTACATGGGTCATTAG 1506 0.5159 MAKKRKLRSSEPESAQVVDSQPAQQEQTQEQQIHEDVREDGQPNPEATQEEEHQGHETMAVDDDTQRGDVKLEENADVGEHQVDDPEEQEGVHPETAEASTDAVPSESAQADANGTEEGDENDDDGDSLDEEESVEKLLEPFTKEQLYSLVKQAVEKYPNFMENIRQLADVDPAHRKIFVHGLGWDTTAETLASVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGARKALKEPQKKIGNRTTSCQLASAGPVPSPASAAPPVSEYTQRKIFVSNVSAELDPQKLLEFFEQFGDIEDGPLGLDKQTGKPKGFALFVYKSAEGAKKALEEPHKNFEGHTLYCQKAVDGPKGNRGYHQHQHQHQYQYHSHHQPHYQSRKEKNKYQSGGAGAGPGHLMAPSVPAVGFNSGVAAAQGLNPALGQALSALLTTQGAGLGLGNLLGGLGGAPANQAGPPTGYVNQGAVGYGNQPGMQVGYQNPQMGQSGGVRPHPGSGAPYMGH 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2193 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Bisa05g2193 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 342 IPR000504 GO:0003723
Bisa05g2193 501 SMART rrm1_1 273 345 IPR000504 GO:0003723
Bisa05g2193 501 SMART rrm1_1 177 249 IPR000504 GO:0003723
Bisa05g2193 501 MobiDBLite consensus disorder prediction 480 501 - -
Bisa05g2193 501 Gene3D - 259 393 IPR012677 -
Bisa05g2193 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Bisa05g2193 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 90 359 - -
Bisa05g2193 501 MobiDBLite consensus disorder prediction 352 393 - -
Bisa05g2193 501 SUPERFAMILY RNA-binding domain, RBD 257 371 IPR035979 GO:0003676
Bisa05g2193 501 SUPERFAMILY RNA-binding domain, RBD 158 255 IPR035979 GO:0003676
Bisa05g2193 501 MobiDBLite consensus disorder prediction 31 79 - -
Bisa05g2193 501 MobiDBLite consensus disorder prediction 114 134 - -
Bisa05g2193 501 MobiDBLite consensus disorder prediction 357 378 - -
Bisa05g2193 501 MobiDBLite consensus disorder prediction 1 134 - -
Bisa05g2193 501 Gene3D - 81 258 IPR012677 -
Bisa05g2193 501 MobiDBLite consensus disorder prediction 13 30 - -
Bisa05g2193 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2193 Bisa-ChrBisa05 49471322 49472827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2193 271 351 C2H2 Transcription Factor Family AT2G19380 33.333 5.13e-10 60.1