Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2175 ATGGGGCCAAATGCGGGTTCTGTGTCAGCGGTCGCGCGACAAGCGGAACAACTTAGAATTAATGGCAACAATTGCTTCAAGAAAGATCGTTTCGGAGCTGCCATCGATGCCTACACCGAGGCAATTACACTATGCCCGAATGTTCCGGTTTATTGGACGAATCGTGCTCTATGCCATCGCAAGCGGAATGACTGGGTGAGAGTTGAGGAAGATTGTCGGAGGGCTATTCAACTAAATAACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCGTTGCTGCAGAGACAAGAATATGTCAAGGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGATATATGGTAGAAGAGATCTGGCAGGAGCTTGCGAATGCAAAATACCTAGAATGGGAACGCTCATCTACCAAGCGGTCATGGGAATTACAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAGCATCTTGCTGTCTCCCAAAGGGAAGGTTTTTCAGGCGAAGATCCAACATCCCTGTCAGAAGAATTAGATGCTTTAGGAGGAGTATTCCATAAAGCTGCAGAGGATGACATGCCTACTGATGTGCCGGATTACCTTTGCTGTAGAATAACGCTCGAAATTTTTCTCGATCCTGTCATTACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTAGGTTTGATCCGGTCACGAGAGAACCACTTGATCCATCCCAGCTAATACCAAACTTGGCCTTAAAGGAAGCAGTCCAGGCATTCTTGGATAAACATGGATGGGCCTACAAGATAGATTGA 846 0.4645 MGPNAGSVSAVARQAEQLRINGNNCFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHRKRNDWVRVEEDCRRAIQLNNNSVKAHYMLGLALLQRQEYVKGIRELEKALDLGRGANPKGYMVEEIWQELANAKYLEWERSSTKRSWELQSLKEACESALKEKHLAVSQREGFSGEDPTSLSEELDALGGVFHKAAEDDMPTDVPDYLCCRITLEIFLDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLIPNLALKEAVQAFLDKHGWAYKID 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2175 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Bisa05g2175 281 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Bisa05g2175 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
Bisa05g2175 281 SUPERFAMILY TPR-like 14 131 IPR011990 GO:0005515
Bisa05g2175 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Bisa05g2175 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Bisa05g2175 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Bisa05g2175 281 SUPERFAMILY RING/U-box 196 278 - -
Bisa05g2175 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Bisa05g2175 281 SMART tpr_5 15 48 IPR019734 GO:0005515
Bisa05g2175 281 SMART tpr_5 83 116 IPR019734 GO:0005515
Bisa05g2175 281 SMART tpr_5 49 82 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2175 Bisa-ChrBisa05 49076101 49081095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2175 8 280 U-box Gene Family AT3G07370 68.000 5.17e-141 396