Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2117 ATGAGTCTCGAAGGCCCAGCTAACCGCGAGACAAGATCCATCAAGAAGCCAAAATTGTCAGACCAAATGGGAATTCCTCCTCCGATCGAGGTTGTAGACGTCGAAGCCTTTTGCGTCACACCCATCTCCGACAAGGGCACAAGCAAAGCCAGTGCCATCTCCGTCGAGCAGTACACCCATGACAGAGACCTCCACCTCGCGATCATGGCGTCTCTGGGCAAAACAAAGCCTCCACCGGAAATCCTCATCGACCTTTCCGACGGCGATGACGATGACGAGGTGAGAGTTCTTAGGTTTAAACCCGAAAATACCCGTTCTCGGAAACGAAGAAAATCCAGAAATTTTTCCGAACCGGGGGAATCTTCCAATTCCATACCCTTCGTTTGTGAAATCTGTACGGAGACCAAGACTGCAAACGAGTCATTTAGCATCAGTGGTTGCTCTCACGCTTATTGTAGCGAGTGTATTGTTATGTACGTGGGGTCTAAGCTGCAAGAAAATATTGTCAACATAAGGTGTCCTGTGTCTGAGTGCAGAGGATTGCTGGAGCCTGATGATTGCCGTGGAATCCTTCCTGTGGAGGTATATGATAGATGGGGTAATGCTTTGTGTGAGGCTGTGATACTTGCAGAAGAAAAGTTTTATTGCCCATATAAGGATTGCTCTGCGCTATTGATTGACGAGGGAGAAGGAGGAGGAGGGCTTATCAGAGAGTCTGAGTGTCCAAACTGTATGAGGCTGTTCTGTGTGCAGTGTAAGGTGCCTTGGCATTCAGGAATTGATTGCGAGGAGTTTCAGAAATTGAGCAAGGACGAGAGAGAGACTGAAGATATTATGCTTATGCGGCTTGCTCAGAAAAGCAAGTGGAGAAGGTGTCCCAAGTGCGGGTTCTACGTCGAGAAATCTTCTGGCTGTATGAATATGAGATGCAGGTGTGGAATTTACTTCTGTTACCATTGCGGAACTGCTGGGGGTTGCCGCGGCTATTAA 990 0.4818 MSLEGPANRETRSIKKPKLSDQMGIPPPIEVVDVEAFCVTPISDKGTSKASAISVEQYTHDRDLHLAIMASLGKTKPPPEILIDLSDGDDDDEVRVLRFKPENTRSRKRRKSRNFSEPGESSNSIPFVCEICTETKTANESFSISGCSHAYCSECIVMYVGSKLQENIVNIRCPVSECRGLLEPDDCRGILPVEVYDRWGNALCEAVILAEEKFYCPYKDCSALLIDEGEGGGGLIRESECPNCMRLFCVQCKVPWHSGIDCEEFQKLSKDERETEDIMLMRLAQKSKWRRCPKCGFYVEKSSGCMNMRCRCGIYFCYHCGTAGGCRGY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2117 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 212 IPR013083 -
Bisa05g2117 329 SMART ibrneu5 197 262 IPR002867 GO:0008270
Bisa05g2117 329 SMART ibrneu5 272 326 IPR002867 GO:0008270
Bisa05g2117 329 CDD BRcat_RBR_unk 212 265 - -
Bisa05g2117 329 SMART ring_2 129 176 IPR001841 -
Bisa05g2117 329 Pfam IBR domain, a half RING-finger domain 207 262 IPR002867 GO:0008270
Bisa05g2117 329 Pfam IBR domain, a half RING-finger domain 277 322 IPR002867 GO:0008270
Bisa05g2117 329 SUPERFAMILY RING/U-box 204 267 - -
Bisa05g2117 329 ProSiteProfiles Zinc finger RING-type profile. 129 177 IPR001841 -
Bisa05g2117 329 SUPERFAMILY RING/U-box 127 206 - -
Bisa05g2117 329 CDD Rcat_RBR_unk 288 322 - -
Bisa05g2117 329 SUPERFAMILY RING/U-box 273 323 - -
Bisa05g2117 329 FunFam RBR-type E3 ubiquitin transferase 124 210 - -
Bisa05g2117 329 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Bisa05g2117 329 Pfam Zinc finger, C3HC4 type (RING finger) 129 174 IPR018957 GO:0046872
Bisa05g2117 329 MobiDBLite consensus disorder prediction 103 122 - -
Bisa05g2117 329 Gene3D - 259 326 - -
Bisa05g2117 329 ProSiteProfiles TRIAD supradomain profile. 125 329 IPR044066 -
Bisa05g2117 329 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 321 IPR031127 GO:0004842|GO:0016567
Bisa05g2117 329 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2117 Bisa-ChrBisa05 47299860 47300849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2117 129 322 C3H Transcription Factor Family AT2G19610 29.851 5.10e-22 94.0