Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2116 ATGCTTGCTGCCGCTTCTTCTGCTTCCAAACGCGTCCGAGCTTCCGAGCTTCTTCAACGCGATGGTAGACCTGGGATAGTATCGCACCGTGCCATTGCCATAAGTTGTTTTAAACCTTCTTCCAGTGTTGATTTGAGTAGAAACTATTGGAGTAGCACTCAAGTTCGATCATTTATTGGTGTTTCTGGCATCAGCACTTACCCAACTCTTAGTAGAATTAGTAGAGATGGATTCAGTTTCAATCCGAGTGCTCTCAGAAGATGTCCAAGTTTGTGTTTTAGTATTAAGGGATTTGTCTTTGATTCATCACCTTCCTATTCCTCGTCGTCACTATATAGCCGAGTAACCAGGCCTTGCTTTCCACAACCTAATTCAACGCTAGATGGGCGAGCTTTGTTCTCAACTTCAACTAAAACTGATGATGGAACAACCTCAAAGCAGATTGAGACACAAAACCAAAAAACTAGTACGACAATTGCCAAAACATCTTCAGGCGAACAGATTGCTGACATGAAAATCCTCCGTACACTTGCCAGTTACTTGTGGATGAAAGATAATCATGAATTCCGATTCCGGGTTATGGCTGCTTTGGGTTTTCTTGTTGGTGCTAAGGTTCTGAATGTTCAGGTCCCTTTTTTATTCAAGCTTGCAGTTGATTGGTTGACTACTGCCACAGGCAATGCTAGTGCTCTTGCTTCTTTTACAGCTGCAAATTCAACTCTGTTAACTCTTTTCGCAACCCCAGCAGCTGTGTTAATTGGATACGGAATTGCACGTTCAGGAGCTTCTGCTTTCAACGAACTGCGTACTGCTGTATTTTCCAAGGTAGCACTGCGAACAATTCGATTAGTATCTAGAAAGGTGTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGTCGAGAAACTGGAGCATTGAATAGAATAATCGATCGTGGTAGCCGTGCAATAAATTTTATCCTCTCATCTATGGTGTTCAACATAGCACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCTTGGATCACTTCCCTATCAGTTGCTGCTTATGTTAGTTTTACACTGACTGTTACACAGTGGAGGACTAAGTTCAGGAAGGTCATGAATAAAGCTGATAATGATGCAAGTACGAGGGCAATTGATTCACTCATTAATTATGAGACTGTCAAATATTTCAATAATGAAGGGTTTGAAGCTGAAAAATACGATGAGTACCTAGAGAGGTATGAAGATGCGGCTCTGAAAACACAAAGGAGTCTTGCTTTTCTGAACTTTGGTCAAAATGTTATATTTAGTACTGCTCTGTCGACGGCAATGGTGTTATGTTCTCAAGGGATTATGAGTGGCCAGATGACTGTTGGTGATTTGGTAATGGTGAATGGGCTCCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAAAGTCTAGTTGACATGAAGGCCATGTTTCAGTTGCTAGAGGAAAGAGCTGACGTTAGGGATAAAGACAATGCAAAGCCTTTGAAATTAAAGGGAGGGAGCATCCAGTTTGAAAATGTACACTTCAGTTATCTTGCAGAAAGAAAAATACTTGATGGAATATCTCTTGTTGTACCGGCTGGAAAAAGTGTGGCAATTGTTGGGACTAGTGGAAGTGGCAAATCAACCATTCTTAGATTGCTCTTCAGGTTTTTTGATCCTCATTTTGGAAGTATAAAGATAGATGGTCAAAATATCCAGGAGGTAACCCTTGATAGTCTAAGGAAGTCTATTGGTGTTGTTCCACAGGATACTGTACTCTTCAATGATACAATTTTTCACAACATTCACTATGGTCGACTTTCGGCAACTAACGAGGAGGTCTATGAAGCTGCTCGGCAAGCAGCAATTCATGACACTATCATGCATTTTCCTCAGCAATATTCTACTGTTGTGGGAGAACGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCTTGGCTCGCACTTTTCTGAAAGCACCTCCAATTTTGTTGTGTGACGAAGCTACAAGTGCACTTGACAGCACAACAGAAGCAGAGATATTAAGTGCGTTGAAATCTTTAGCAAACAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACCGCCATGCAGTGTGATGAGATTATAGTGCTAGAAAATGGAAAGGTGATTGAACAAGGACCGCATGAACTGCTCCTATCAAATGGTGGAAGATATGCACAGCTTTGGGCACAGCAAAATAGCTCAGTCGATGCAATTGATGCAGCCATGAAAGTAGGGACATAA 2340 0.4167 MLAAASSASKRVRASELLQRDGRPGIVSHRAIAISCFKPSSSVDLSRNYWSSTQVRSFIGVSGISTYPTLSRISRDGFSFNPSALRRCPSLCFSIKGFVFDSSPSYSSSSLYSRVTRPCFPQPNSTLDGRALFSTSTKTDDGTTSKQIETQNQKTSTTIAKTSSGEQIADMKILRTLASYLWMKDNHEFRFRVMAALGFLVGAKVLNVQVPFLFKLAVDWLTTATGNASALASFTAANSTLLTLFATPAAVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNIAPTILEISMVSGILAYKFGAPFAWITSLSVAAYVSFTLTVTQWRTKFRKVMNKADNDASTRAIDSLINYETVKYFNNEGFEAEKYDEYLERYEDAALKTQRSLAFLNFGQNVIFSTALSTAMVLCSQGIMSGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKAMFQLLEERADVRDKDNAKPLKLKGGSIQFENVHFSYLAERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHFGSIKIDGQNIQEVTLDSLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATNEEVYEAARQAAIHDTIMHFPQQYSTVVGERGLKLSGGEKQRVALARTFLKAPPILLCDEATSALDSTTEAEILSALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHELLLSNGGRYAQLWAQQNSSVDAIDAAMKVGT 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2116 779 SMART AAA_5 554 740 IPR003593 GO:0016887
Bisa05g2116 779 FunFam ATP-binding cassette sub-family B member 7 165 517 - -
Bisa05g2116 779 Pfam ABC transporter 545 694 IPR003439 GO:0005524
Bisa05g2116 779 Gene3D - 520 776 IPR027417 -
Bisa05g2116 779 CDD ABC_6TM_ATM1_ABCB7 196 503 - -
Bisa05g2116 779 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 195 495 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa05g2116 779 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 148 760 IPR039421 -
Bisa05g2116 779 FunFam ABC transporter B family member 25 521 775 - -
Bisa05g2116 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 764 IPR027417 -
Bisa05g2116 779 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 529 763 IPR003439 GO:0005524
Bisa05g2116 779 Pfam ABC transporter transmembrane region 195 482 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa05g2116 779 Gene3D ABC transporter type 1, transmembrane domain 180 519 IPR036640 GO:0005524|GO:0016020
Bisa05g2116 779 SUPERFAMILY ABC transporter transmembrane region 188 508 IPR036640 GO:0005524|GO:0016020
Bisa05g2116 779 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524|GO:0016887
Bisa05g2116 779 CDD ABCC_ATM1_transporter 529 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2116 Bisa-ChrBisa05 47244412 47261040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2116 503 767 Calmodulin-binding Proteins AT2G36910 44.444 8.38e-61 221