Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2098 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGCGCAGTTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGAAGAAAGGAGGTTTATAGGTGAAAGGTACTCGAGGGATAATATATATCATAGAAGTGCCTTCCACCGTGATGTTTTGGATAGGGAGGCATATCCGCCATCAGGGCCACCTGATGGCCATTGGAGTGAATCCAAACATAGAGGATATGATGAAGATTATCTGCTGGAGAGGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATCATCAGATTGATTCTTTTAGAGATCGGGAGGTTGACACATATCCAGAATTTGATAAGTTTCGGGATGGCTCTGTCAGCAATGAAAACTATGGCGATCGAGGATATGATAAACTTGGCAGGTTTGGAGGACATGATCGTGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGTATCCCATCATCATAGGGAGGATAGCCATGAGAGGGATATTGATTTTGGTCGACACAGTCATGATTCTGATTATGGAAGAGGTAGAAGAGATAGTAATTGGAGGCGACGCGAATCTCGGGATCGAGATGATAAAAGATATCCAAGTCGGGAAAGAGATTTGAGTCCGCATAGGAGGCATGAGCGGTCCCATTCTCGTTCTCGCTCCCGGTCTCGCTCCCATTCTCATTCGCGTTCTCGTTCCCAATCTCATGGATATGATGATCGCCCAAGGTCAAGGTCCCCTCGAGGTCGAAGTCATGGCCGAAGTTATCGAGAAGACAGCTATGCTGACAGTCGATATGAGAGGAGTGAAAAGCGTAGGGATCGTGAAGAGAAACGACGTGAGCATTATGCTGTGGCTCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAATGCGAATGAAGAAGATCTATACCAGATTCTTGCTGAATGGGGGCCGCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCATCTCCCGTGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGACAAACTTGGAGATGATGGTCTTGTTGTGGATGGTAGAAAACTCTTCTTTGAATATAGTAGTAAGCCAACTGGAGGGCCAGGTGGACCTTTTGGTCAAGAGGGATCAGTGAAATCGGGGCATAGTCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTGGCTACATCAATTTTGCACGTCGAACATCCTGCTATCAGTGTAATGAACCACGGAGTGAGGATGCTCCTGCAGCAGATATTACATTATCTAATCCGACAGCCTTAGGAAAGAAGGGATTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGCGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAGTTCTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACGCATGTCTCAAGGGGATTTGCATTTGTGCATTTCTATTCGGTGGAGGATGCTACCAAGGCTCTTGAAGCAACCAATGGAACAACCCTTGAGAAGAATGGACAGATCCTAAGAGTAGCATATGCGAAAAGTATCCTTGGCCCTGGATCAGGAACATCAGGACCTTCCCAGTCAAGCAGTTTAGCAGCTGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGCCAAGAGCAAACAGGTGCGGCTCAGAAGGATGCAATGGCTCCACAGTCAGGCTTCGTTTGGGATGAGGCATCTGGCTATTACTACGATGCTGCTTCTGGATTTTACTATGATGGGAATACAGGTCTTTATTATGATGGGAATAATGGGATTTGGTATTCATATGATCACCAAACTCAACAATACGTTCCTTGCACTGATCAAACTGAGAATAAAGCACCTAATAGTCAGTCTGAACCTTCCAAAGCGTCTGATGGTTCCAGCAGTAAAAAAGTGGTGATTTCTGCACCAGCTACTACTATTGAGAAGCCAGCTTCATTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTAAAGGAGATTAAGCTTGCTTCAAAAAGCAGTATTCTGGCTAACAAGAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGCGGAGCCATGAGGGGCAGGCTACTCGTGTTGCTCTGGAAGACAATCAGCAGTCTGTATCCACTGATGATAGATCTTCTGGATATCCCACAAAGAGCAAGTTCAAAATTGAGACTTCAGCTGCAAGGGATAATAATGCATCCGCTTCAGGGATCCCTACTGCTGCTGCTACTCAGGTTGTTGCTTTGGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGGGGTACTGTGATGGGGGTTATAAGGGGCTCTGGAAGAGGAATCATTAAATCAGATACCTCTTACTCAGGACCTACAGCAGCTGCTGCTGCATGCACATCAGCCTCATCTTCAACAAATGTAGATGCACCAACAGCTGCAAATCCCTTTAGGACAGATGTCTCTGCCCTGGGGTCATATACACCACCTGTTGCTGGTGGAAGTGGCAGAAGAAGATTTTCAGAAATGCCTCATTCTACTTCAACCCCCAAGGAACAACCTCAATCTACCTACAGGGATCGTGCTGCTGAGAGGAGAAGTTTGTACGGGTCATCATCATCAATTGGGGATGATCTGGCTGACCTTGAAGCTGGTGATTCAAATCGAGATTTTGCATCGAGGAAGGGTGATCTAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGACACCTATGAGGTGATTACGGCTGACAAAGCAATTGATGAGAACAATGTTGGCAATAGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGACTAGGGAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGGCACAAGCCACTGAAAGTAGAGCGGGACTTGGAAGTCAGCAGAAAAAGTTGGTGGATCCTAGCCTTGAGGTTCAGGCAGGAGATAGTTACAAGACGCTTATTCATAAGAAGGCGCTTGCCAGGTTTTGGGAAATGTCATAG 3189 0.4591 MDPARYGLHQGWDNNSALEGYGAVHEPNYRVGGSYEERRFIGERYSRDNIYHRSAFHRDVLDREAYPPSGPPDGHWSESKHRGYDEDYLLERESRRLQRPYYDSYHQIDSFRDREVDTYPEFDKFRDGSVSNENYGDRGYDKLGRFGGHDRDDYAYDDYGYRSRVSHHHREDSHERDIDFGRHSHDSDYGRGRRDSNWRRRESRDRDDKRYPSRERDLSPHRRHERSHSRSRSRSRSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSYADSRYERSEKRRDREEKRREHYAVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGGPFGQEGSVKSGHSHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQKDAMAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYVPCTDQTENKAPNSQSEPSKASDGSSSKKVVISAPATTIEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQQSVSTDDRSSGYPTKSKFKIETSAARDNNASASGIPTAAATQVVALDSQVQPRPVSNSLGGTVMGVIRGSGRGIIKSDTSYSGPTAAAAACTSASSSTNVDAPTAANPFRTDVSALGSYTPPVAGGSGRRRFSEMPHSTSTPKEQPQSTYRDRAAERRSLYGSSSSIGDDLADLEAGDSNRDFASRKGDLMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQATESRAGLGSQQKKLVDPSLEVQAGDSYKTLIHKKALARFWEMS 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 165 294 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 225 243 - -
Bisa05g2098 1062 PANTHER RNA-BINDING PROTEIN 201 1058 - -
Bisa05g2098 1062 SMART zf_4 409 433 IPR001876 -
Bisa05g2098 1062 SUPERFAMILY RNA-binding domain, RBD 299 430 IPR035979 GO:0003676
Bisa05g2098 1062 Gene3D - 405 437 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 62 81 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 578 604 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 165 224 - -
Bisa05g2098 1062 Gene3D - 452 603 IPR012677 -
Bisa05g2098 1062 Gene3D - 266 404 IPR012677 -
Bisa05g2098 1062 Pfam G-patch domain 986 1027 IPR000467 GO:0003676
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 879 937 - -
Bisa05g2098 1062 Pfam OCRE domain 607 655 IPR041591 -
Bisa05g2098 1062 ProSiteProfiles Zinc finger RanBP2 type profile. 407 436 IPR001876 -
Bisa05g2098 1062 CDD RRM1_RRM2_RBM5_like 460 540 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 896 911 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 244 294 - -
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 658 681 - -
Bisa05g2098 1062 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 542 IPR000504 GO:0003723
Bisa05g2098 1062 ProSiteProfiles G-patch domain profile. 985 1031 IPR000467 GO:0003676
Bisa05g2098 1062 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 381 IPR000504 GO:0003723
Bisa05g2098 1062 SMART rrm1_1 302 377 IPR000504 GO:0003723
Bisa05g2098 1062 SMART rrm1_1 463 538 IPR000504 GO:0003723
Bisa05g2098 1062 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 363 IPR000504 GO:0003723
Bisa05g2098 1062 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 530 IPR000504 GO:0003723
Bisa05g2098 1062 ProSitePatterns Zinc finger RanBP2-type signature. 411 430 IPR001876 -
Bisa05g2098 1062 CDD OCRE_SUA_like 605 656 IPR035623 -
Bisa05g2098 1062 SUPERFAMILY RNA-binding domain, RBD 460 550 IPR035979 GO:0003676
Bisa05g2098 1062 SMART G-patch_5 983 1029 IPR000467 GO:0003676
Bisa05g2098 1062 MobiDBLite consensus disorder prediction 123 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2098 Bisa-ChrBisa05 46650732 46658808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2098 300 526 Eukaryotic Initiation Factors Gene Family AT2G36660 25.591 9.11e-10 60.8