Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g2008 ATGCACGGAAGATCCGATGCTTTTAGATCGATTTTGACAAAACCCACTTCGTATCTGATCGGGTTACCAACTGGTTTCTGTCTGAATTTTAAGATAAGGTGCGCCTTCTTGACCAGATTTTTGTCAACTGCAATTTTAATCGCTTGCGTATGCTCTTAACAGATGGAATCGGATCTCGGTAAGCTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAGGAATATTTTGGGAATTATGGAGAGGTGATAGAAGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTGCAGTTGCTGAACGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCACACCATAAATAGAAACTCTGCTAGTGTCCATGGCTCTCCTGGTCCAGGGCGAACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATTACTGAAAGTGATTTTAAGCAGTATTTTGATCAGTTTGGTACTATTACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTTGACAGAGTTCTCTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCACCCGGAGCTCATTCGTAGGATACAACTATGGCATGAATAGGACTAGTAGCTATCTAAATAATTATGCTCAGGGTTACAATATGAGTCCGATTGGAGGCTATAGATTGAGGATGGATGGTAGATTTAGTCCTGTTACTAGTGGTAGAAGTGGGTTTTCCCCATTTGCCACCAGTGGTTATGGAATGGGAGTGAATATGGATGCAGGATTGAACCCAAGCTATGGAGGGACTTCCAATTACGGGAGCAGTCTAGGATATGGTCGGATATTTAGTCCTTTCTCTAGTGGCAACTCTAGCAGATACACCACGCCTATAGGGTACAGTGGGGGTAATGGGAGAAGTGATTCTGTTATGAACTCAACTTCTCGCAATGTCTGGGGAAATGGGGGCCTGAATCAAGCTAATAACCTAGTCAACCCGGGTGCTTACTTGGGATCTGGAGGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGTACCAATTGGGGTCAATCCAATTCAATCCCAGGTGGAGGGGTTGGTTCTGGCTATGCCACTGGAAGTAATGTTTATGAAGGTGGAGACAGCAGCTTTGCATCTGGAGGGGCAGGTTATGGAAGACATGGCAACACAGGTGTAACTCCGTCCTCTTCATTTACTGCATCAATTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCATTGGTTCAGTTTACAATGACACAACTTGGCGCACTGCTGGTTCTGACCTAGATGGTTCTGGCTCATTTGGTTATGAACTTGGTGGTCTAGCCTCAGAGGAACCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTCACAAGTAGACAGTCTAATAGAGGAATTGCTGCATAG 1596 0.4392 MHGRSDAFRSILTKPTSYLIGLPTGFCLNFKIRCAFLTRFLSTAILIACVCSXQMESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRNSASVHGSPGPGRTKKIFVGGLPSTITESDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSSFVGYNYGMNRTSSYLNNYAQGYNMSPIGGYRLRMDGRFSPVTSGRSGFSPFATSGYGMGVNMDAGLNPSYGGTSNYGSSLGYGRIFSPFSSGNSSRYTTPIGYSGGNGRSDSVMNSTSRNVWGNGGLNQANNLVNPGAYLGSGGGAFGVSIGNSGTNWGQSNSIPGGGVGSGYATGSNVYEGGDSSFASGGAGYGRHGNTGVTPSSSFTASIGGYEGSYGDLYRIGSVYNDTTWRTAGSDLDGSGSFGYELGGLASEEPVKNSEGYIGNYNVTSRQSNRGIAA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g2008 531 FunFam Heterogeneous nuclear ribonucleoprotein 1 157 244 - -
Bisa05g2008 531 SUPERFAMILY RNA-binding domain, RBD 55 157 IPR035979 GO:0003676
Bisa05g2008 531 CDD RRM2_Hrp1p 161 238 - -
Bisa05g2008 531 FunFam Heterogeneous nuclear ribonucleoprotein 1 59 141 - -
Bisa05g2008 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Bisa05g2008 531 SMART rrm1_1 61 132 IPR000504 GO:0003723
Bisa05g2008 531 SMART rrm1_1 161 233 IPR000504 GO:0003723
Bisa05g2008 531 CDD RRM1_hnRNPA_hnRNPD_like 62 132 - -
Bisa05g2008 531 Gene3D - 60 142 IPR012677 -
Bisa05g2008 531 SUPERFAMILY RNA-binding domain, RBD 158 258 IPR035979 GO:0003676
Bisa05g2008 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 136 IPR000504 GO:0003723
Bisa05g2008 531 Gene3D - 157 243 IPR012677 -
Bisa05g2008 531 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 55 527 - -
Bisa05g2008 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 129 IPR000504 GO:0003723
Bisa05g2008 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g2008 Bisa-ChrBisa05 43499806 43502758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g2008 59 234 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.17e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g2008 05 43499806 43502758 Bisa05g2008 05 43499806 43502758 ECH