Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bisa05g2008 | ATGCACGGAAGATCCGATGCTTTTAGATCGATTTTGACAAAACCCACTTCGTATCTGATCGGGTTACCAACTGGTTTCTGTCTGAATTTTAAGATAAGGTGCGCCTTCTTGACCAGATTTTTGTCAACTGCAATTTTAATCGCTTGCGTATGCTCTTAACAGATGGAATCGGATCTCGGTAAGCTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAGGAATATTTTGGGAATTATGGAGAGGTGATAGAAGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTGCAGTTGCTGAACGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCACACCATAAATAGAAACTCTGCTAGTGTCCATGGCTCTCCTGGTCCAGGGCGAACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATTACTGAAAGTGATTTTAAGCAGTATTTTGATCAGTTTGGTACTATTACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTTGACAGAGTTCTCTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCACCCGGAGCTCATTCGTAGGATACAACTATGGCATGAATAGGACTAGTAGCTATCTAAATAATTATGCTCAGGGTTACAATATGAGTCCGATTGGAGGCTATAGATTGAGGATGGATGGTAGATTTAGTCCTGTTACTAGTGGTAGAAGTGGGTTTTCCCCATTTGCCACCAGTGGTTATGGAATGGGAGTGAATATGGATGCAGGATTGAACCCAAGCTATGGAGGGACTTCCAATTACGGGAGCAGTCTAGGATATGGTCGGATATTTAGTCCTTTCTCTAGTGGCAACTCTAGCAGATACACCACGCCTATAGGGTACAGTGGGGGTAATGGGAGAAGTGATTCTGTTATGAACTCAACTTCTCGCAATGTCTGGGGAAATGGGGGCCTGAATCAAGCTAATAACCTAGTCAACCCGGGTGCTTACTTGGGATCTGGAGGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGTACCAATTGGGGTCAATCCAATTCAATCCCAGGTGGAGGGGTTGGTTCTGGCTATGCCACTGGAAGTAATGTTTATGAAGGTGGAGACAGCAGCTTTGCATCTGGAGGGGCAGGTTATGGAAGACATGGCAACACAGGTGTAACTCCGTCCTCTTCATTTACTGCATCAATTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCATTGGTTCAGTTTACAATGACACAACTTGGCGCACTGCTGGTTCTGACCTAGATGGTTCTGGCTCATTTGGTTATGAACTTGGTGGTCTAGCCTCAGAGGAACCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTCACAAGTAGACAGTCTAATAGAGGAATTGCTGCATAG | 1596 | 0.4392 | MHGRSDAFRSILTKPTSYLIGLPTGFCLNFKIRCAFLTRFLSTAILIACVCSXQMESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRNSASVHGSPGPGRTKKIFVGGLPSTITESDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSSFVGYNYGMNRTSSYLNNYAQGYNMSPIGGYRLRMDGRFSPVTSGRSGFSPFATSGYGMGVNMDAGLNPSYGGTSNYGSSLGYGRIFSPFSSGNSSRYTTPIGYSGGNGRSDSVMNSTSRNVWGNGGLNQANNLVNPGAYLGSGGGAFGVSIGNSGTNWGQSNSIPGGGVGSGYATGSNVYEGGDSSFASGGAGYGRHGNTGVTPSSSFTASIGGYEGSYGDLYRIGSVYNDTTWRTAGSDLDGSGSFGYELGGLASEEPVKNSEGYIGNYNVTSRQSNRGIAA | 531 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bisa05g2008 | 531 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 157 | 244 | - | - | |
Bisa05g2008 | 531 | SUPERFAMILY | RNA-binding domain, RBD | 55 | 157 | IPR035979 | GO:0003676 | |
Bisa05g2008 | 531 | CDD | RRM2_Hrp1p | 161 | 238 | - | - | |
Bisa05g2008 | 531 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 59 | 141 | - | - | |
Bisa05g2008 | 531 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 160 | 237 | IPR000504 | GO:0003723 | |
Bisa05g2008 | 531 | SMART | rrm1_1 | 61 | 132 | IPR000504 | GO:0003723 | |
Bisa05g2008 | 531 | SMART | rrm1_1 | 161 | 233 | IPR000504 | GO:0003723 | |
Bisa05g2008 | 531 | CDD | RRM1_hnRNPA_hnRNPD_like | 62 | 132 | - | - | |
Bisa05g2008 | 531 | Gene3D | - | 60 | 142 | IPR012677 | - | |
Bisa05g2008 | 531 | SUPERFAMILY | RNA-binding domain, RBD | 158 | 258 | IPR035979 | GO:0003676 | |
Bisa05g2008 | 531 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 136 | IPR000504 | GO:0003723 | |
Bisa05g2008 | 531 | Gene3D | - | 157 | 243 | IPR012677 | - | |
Bisa05g2008 | 531 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 55 | 527 | - | - | |
Bisa05g2008 | 531 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 62 | 129 | IPR000504 | GO:0003723 | |
Bisa05g2008 | 531 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 162 | 220 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bisa05g2008 | Bisa-ChrBisa05 | 43499806 | 43502758 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bisa05g2008 | 59 | 234 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.596 | 1.17e-08 | 55.8 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bisa05g2008 | 05 | 43499806 | 43502758 | Bisa05g2008 | 05 | 43499806 | 43502758 | ECH |