Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1992 ATGGATGCGACGCCCGCCTCCGAGGCGAAGGACACGGTGGTGGAGCCGCAACCGGAGAGCTTGGCGGAGAAGAGGTCGGTTGAGAATGGTGGCGATGACGAATTGGGCGACCGGTGTAGCAAGAGGCCTAAGATTGAAGCTGCAACGAACGTGGAATTGAAGAGAGTGGCGGAAATTGTGCTAGTTTTGTCGACAATGGCCACAATGCGAGGTGGTAGGAAGCCAACTGACGTGGAGATTGAGCTGATGAAGGAGGCTCGAGCCAAGTTAGTGGAGCTATGCCAAGGGATTGCTCCGAAAGACATTGTGGCAAGGGAGGCTATAGGGAATGTAATTGAGGATCTCGGGTTGACTGGGAAGAATAAAGACCAGAGGCTAGGGTTTCGAACTCCGAAGATGTCTATAGCCGAGAGGTTTTCACACACAAAGTGGAAGATGGAAGAATCAAAGAAGTTTTCTGTTCATTCTGGATCATATACATCTCAGGCTCAGCCATTGCAAACAAGCATTGGTGGTGGAACAGTTGAAAATCATGTGCCATCACATGCTATTCGAATGTTTCCATCAGATAAATCAAGCCACGTGGCAATCTCTTCTGTTACCCTTGCTTCTACATCTATTGCAACTTCTACAGCTTTGCAACATCAATCAGCTGGCAATGAAACAAGAGCACCTATGGTTTCTGGCGTAATGAATGGCAGTCACTTGGGGAGGAATCCATCTTCCTTATCATTACCTAAAGTTGAACAAGCACATTTCAAAGTTGAAGGAGCATCAAATGCATCTTATGTGCTACAAGTGCAAGCAAACCAACCTATGGTGAATGCTCCAACTTGGTCAATACAGACTCAGTCTGCCTCACTAGCTAGAAGTGCACCAGAAAACAAGGTGCCTAGTCATACTTCTGTCAAGGTTGAGGGAACAGTGTCAAGTGCAGCTCAACAAATAGCCAGGGATCAGAACTTTAAACCATTTATTTCTCAAACAGCACCTGGAAGTTTATCTAGTATGCACCAGCCATCACAGAGCATGAACATTACTCAGCCTCCTTCACAACCTAATAATCATGCTGAAATTGCAAAGGTTGTCCAGAAATTGCTACAACCAAAGCTTCCTGAGCATCCCACATGGACTCCACCATCCAGGGATTATATGAACAAGGCTTTGACTTGCCAGATGTGTGAACTCACTGTCAATGAGGTAGATACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGATTTCACTTGAAGTGTCTGCAGCCATCAATCTTAAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGATGCTTGACAATAAGTGGTGGAAAGCCCTTGCCTCCAAAATATGGCCGTGTCATGAGATCATCAAACACTCCACAAAAAGTGCCCTCAAACACAATAGGAATTCAACCATCTTTGGAGAAGAAAGCAGGAGTGTTAGATCCACAGATCAGCACGCAGAAGTTAACAACAAATCGGAGCACTATTGTACCTGGTGCTAATGGCAACAACAATGTTGAGCCACAATCTAATACTAAGACCCCTGAAAAAAGAGAAATACCAGGGGGCACCATTTCATCCAGCGTTAAGTATACCTATGAGAAGCCTGACCCAGTCATTTCAGGGAAACCCCTTACTGCAGCTTCTAGTCCTTCTGGCTTGTTTGGTGAAAGAGTTGCTCATCAAATAAAAGGTTCTGAAACATCTACTTGTACAGAGAAAACATGTAATTCAGAAACAGAGATTCTTTCTAAATTACCTGGGTCATTTGAAAGGGACAACTTGGAATTGTTGCAAACTTCACAAGTTGAGCAGACAGTGTTGCAATACGATGCTGAAGGATCATCAAGTAAATGCCTTGATGTTAGTTCGGCAGATAATAACCAAAAGGAATCTCATGGAGGAGAAACTTTGATATATGATATCAAGCGTGATGACCAAGATGTTGCACTGGCAAATTCTGATGGCAGTTTAGGAATTAACACTGAAGGTAGACAGTTAACTGTATTATCTGCAGATGGCTCACATTCTGTAGAATGGATTGGTGATGTTATACAACTTGTCGATGAGAACAAGTTTTACCAATCTTGCTATGTTGATGGAGTAATATATAGGTTGCAGGATTTTGCCCTTTTCCCCACCAGTAAAGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGCTTGAAGTGGATTAGCATGACCCAGTGCTACTTTCCTGGTGATTTACCAGGAAATATTGCCCATCCATGTATATTTGAAGTCAATGAGGTTTTTGAATCTAATAGTGTTAGAACTGAAAAGGCTGGCTGTATTCGAGGCCAATGTGAAGTCCTCCCATCTGATAAATTTGAACAAGAAACTGACAAACGAAGTCAATTAGGGCTTGAGGCAAATGCTAGATTACATCCAATTTTCCTTTGCAGGTTGAGGGGAATTGGGGAAAGAGTAAAGTATTCTGCCTCAGTATCTTTTGTGAAATTGGATGGTTCCCCATTGTATGGGGAGTTGGGCTTAGAAAAGAGGAAGAAAACAGGAACTCTTGCTTCCTCGCTAAGAATTTTGCTTTCTGCTCTCATGATGCGATATATTGGAAATCTAGCTCCCTTTTTCTCTTGTTATTTTTATGTACCAAGGCACGGGGATAATTGA 2673 0.431 MDATPASEAKDTVVEPQPESLAEKRSVENGGDDELGDRCSKRPKIEAATNVELKRVAEIVLVLSTMATMRGGRKPTDVEIELMKEARAKLVELCQGIAPKDIVAREAIGNVIEDLGLTGKNKDQRLGFRTPKMSIAERFSHTKWKMEESKKFSVHSGSYTSQAQPLQTSIGGGTVENHVPSHAIRMFPSDKSSHVAISSVTLASTSIATSTALQHQSAGNETRAPMVSGVMNGSHLGRNPSSLSLPKVEQAHFKVEGASNASYVLQVQANQPMVNAPTWSIQTQSASLARSAPENKVPSHTSVKVEGTVSSAAQQIARDQNFKPFISQTAPGSLSSMHQPSQSMNITQPPSQPNNHAEIAKVVQKLLQPKLPEHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSILRGIPRGEWHCMRCLTISGGKPLPPKYGRVMRSSNTPQKVPSNTIGIQPSLEKKAGVLDPQISTQKLTTNRSTIVPGANGNNNVEPQSNTKTPEKREIPGGTISSSVKYTYEKPDPVISGKPLTAASSPSGLFGERVAHQIKGSETSTCTEKTCNSETEILSKLPGSFERDNLELLQTSQVEQTVLQYDAEGSSSKCLDVSSADNNQKESHGGETLIYDIKRDDQDVALANSDGSLGINTEGRQLTVLSADGSHSVEWIGDVIQLVDENKFYQSCYVDGVIYRLQDFALFPTSKGKLTPSKLQSMWEDSKTGLKWISMTQCYFPGDLPGNIAHPCIFEVNEVFESNSVRTEKAGCIRGQCEVLPSDKFEQETDKRSQLGLEANARLHPIFLCRLRGIGERVKYSASVSFVKLDGSPLYGELGLEKRKKTGTLASSLRILLSALMMRYIGNLAPFFSCYFYVPRHGDN 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1992 890 ProSitePatterns Zinc finger PHD-type signature. 391 437 IPR019786 -
Bisa05g1992 890 MobiDBLite consensus disorder prediction 495 518 - -
Bisa05g1992 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 457 IPR013083 -
Bisa05g1992 890 MobiDBLite consensus disorder prediction 331 352 - -
Bisa05g1992 890 SUPERFAMILY FYVE/PHD zinc finger 381 445 IPR011011 -
Bisa05g1992 890 ProSiteProfiles Zinc finger PHD-type profile. 388 440 IPR019787 -
Bisa05g1992 890 MobiDBLite consensus disorder prediction 1 41 - -
Bisa05g1992 890 ProSiteProfiles BAH domain profile. 703 830 IPR001025 GO:0003682
Bisa05g1992 890 SMART PHD_3 390 438 IPR001965 -
Bisa05g1992 890 Gene3D - 682 834 IPR043151 -
Bisa05g1992 890 Pfam PHD-finger 391 438 IPR019787 -
Bisa05g1992 890 MobiDBLite consensus disorder prediction 495 525 - -
Bisa05g1992 890 MobiDBLite consensus disorder prediction 17 41 - -
Bisa05g1992 890 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1992 Bisa-ChrBisa05 42080802 42088670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1992 390 438 C2H2 Transcription Factor Family AT3G01460 40.816 4.99e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa05g1992 PHD 2.6e-08 CL0390